# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1efaA 333 2.93e-31 a.35.1.5,c.93.1.1 17106,35691 1jftA 340 3.17e-31 a.35.1.5,c.93.1.1 66652,66653 1qpzA 340 1.43e-30 a.35.1.5,c.93.1.1 17097,35673 1vpwA 340 1.49e-30 a.35.1.5,c.93.1.1 17087,35680 2o20A 332 1.42e-25 2fepA 289 1.96e-25 2iksA 293 4.35e-25 3ctpA 330 9.59e-25 2rgyA 290 1.01e-24 3bblA 287 1.39e-24 3brqA 296 2.11e-24 3c3kA 285 3.02e-24 1dbqA 289 3.12e-24 c.93.1.1 35666 3cs3A 277 5.40e-24 2qu7A 288 6.38e-24 1jyeA 349 4.06e-23 c.93.1.1 67455 2h0aA 276 8.35e-23 3bilA 348 1.08e-22 1tlfA 301 1.58e-22 c.93.1.1 35687 3clkA 290 2.43e-21 1bykA 255 2.94e-21 c.93.1.1 35706 2driA 271 7.80e-21 c.93.1.1 35637 2ioyA 283 9.86e-21 2fn9A 290 1.92e-20 2dri 271 3.26e-20 1jx6A 342 5.93e-20 c.93.1.1 67406 1gudA 288 1.38e-17 c.93.1.1 83326 2h3hA 313 2.87e-17 2qvcA 313 7.52e-17 3c6qA 311 1.09e-16 3brsA 289 1.69e-16 2rjoA 332 3.89e-16 1gca 309 1.91e-15 8abp 306 2.12e-15 2fvyA 309 1.43e-14 c.93.1.1 134227 8abpA 306 1.44e-14 c.93.1.1 35647 3d02A 303 4.00e-14 1tjyA 316 3.82e-13 c.93.1.1 107062 2bjcA 62 1.43e-06 a.35.1.5 128620 1cjgA 62 1.50e-06 a.35.1.5 17112 1lccA 51 2.69e-05 a.35.1.5 17110 2hqbA 296 0.000121 1usgA 346 0.000974 c.93.1.1 99864 2qh8A 302 0.001257 2fqxA 318 0.001449 2liv 344 0.001738 1z15A 344 0.005430 1peaA 385 0.01506 c.93.1.1 35662 1jdpA 441 0.03909 c.93.1.1 62906 1pea 385 0.03968 2h4aA 325 0.05317 1dp4A 435 0.1344 c.93.1.1 35710 6pfkA 319 0.2984 c.89.1.1 35583 3pfk 319 0.3021 1ewkA 490 0.3159 c.93.1.1 35712 2vlbA 251 0.3363 2e4uA 555 0.3593 3ckmA 327 0.4559 2pfkA 320 0.5038 c.89.1.1 35577 1zxxA 319 0.5220 2dgdA 223 0.5717 2hmcA 344 0.8212 2v9dA 343 1.070 1pfkA 320 1.122 c.89.1.1 35575 1j6pA 418 2.105 b.92.1.4,c.1.9.9 77089,77090 2hk9A 275 4.017 1dhpA 292 4.678 c.1.10.1 29097 1o5kA 306 6.027 c.1.10.1 92504 1nvtA 287 7.180 c.2.1.7,c.58.1.5 86270,86271 2q09A 416 8.922 1p1mA 406 10.32 b.92.1.4,c.1.9.9 87696,87697 2c4wA 176 12.36 1vljA 407 12.75 e.22.1.2 108832 2rfgA 297 13.50 1xkyA 301 14.02 c.1.10.1 122094 1r30A 369 16.11 c.1.28.1 96895 2f46A 156 20.09 2eggA 297 21.14 1ta9A 450 21.29 2v25A 259 21.32 2r8wA 332 21.50 2r91A 286 21.64 2i9uA 439 22.99 1h05A 146 24.05 c.23.13.1 76433 2etvA 346 24.19 c.92.2.4 132372 1kq3A 376 24.25 e.22.1.2 68790 2ehhA 294 25.15 2f48A 555 26.47 c.89.1.1 132915 1i7qB 193 26.84 c.23.16.1 61902 1s1mA 545 27.01 c.23.16.1,c.37.1.10 105201,105202 2bdqA 224 27.21 1fdyA 297 27.29 c.1.10.1 29071 1on2A 142 28.26 a.4.5.24,a.76.1.1 87103,87104 2dhqA 146 29.00 c.23.13.1 31382 1rrmA 386 30.74 e.22.1.2 105081 1i1qB 192 31.14 c.23.16.1 61544 2zdrA 349 31.71 4pgaA 337 33.01 c.88.1.1 35565 2ojpA 292 33.09 3b7hA 78 33.34 1gkuB 1054 35.30 c.37.1.16,c.37.1.16,e.10.1.1 65257,65258,65259 2fp4B 395 36.45 c.23.4.1,d.142.1.4 133897,133898 2q88A 257 37.90 2choA 716 38.17 a.246.1.1,c.1.8.10,d.92.2.3 130479,130480,130481 2p6pA 384 38.81 1c7qA 445 39.08 c.80.1.2 35307 1uqrA 154 39.55 c.23.13.1 99779 2fb2A 340 39.91 2r79A 283 41.11 1w3iA 293 42.22 c.1.10.1 109152 2z1aA 552 43.04 1je0A 236 43.14 c.56.2.1 66581 2ebyA 113 43.93 2ahdA 165 44.29 d.159.1.7 126752 1amoA 615 44.55 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 3pga1 337 45.00 1npdA 288 45.85 c.2.1.7,c.58.1.5 80681,80682 3b4uA 294 46.91 1jflA 228 47.47 c.78.2.1,c.78.2.1 71656,71657 1f74A 293 50.63 c.1.10.1 29079 1a6i 217 50.99 1zccA 248 51.18 c.1.18.3 124903 1yrrA 382 51.50 b.92.1.5,c.1.9.10 123935,123936 2scuB 388 51.74 c.23.4.1,d.142.1.4 31141,41562 2atsA 292 52.22 c.1.10.1 127306 1yzfA 195 52.79 c.23.10.5 124275 1vcoA 550 52.85 c.23.16.1,c.37.1.10 108508,108509 1tv8A 340 54.24 c.1.28.3 107352 1wl8A 189 54.46 c.23.16.1 120997 2ictA 94 54.63 2ek5A 129 55.20 1c0wA 225 55.70 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1vizA 240 55.75 c.1.4.1 100784 1wpgA 994 56.66 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 1z7yA 322 56.98 c.79.1.1 124679 1z0xA 220 57.44 a.4.1.9,a.121.1.1 124334,124335 2bsxA 253 57.80 c.56.2.1 129128 1ush 550 58.78 1ra0A 430 60.94 b.92.1.2,c.1.9.5 111756,111757 2fr1A 486 61.63 c.2.1.2,c.2.1.2 133961,133962 2jfuA 291 61.68 2a6nA 292 61.73 c.1.10.1 126289 1vzwA 244 62.36 c.1.2.1 120553 2pz0A 252 62.55 1eudB 396 63.19 c.23.4.1,d.142.1.4 31150,41571 1nal1 297 63.89 1vd6A 224 64.69 c.1.18.3 119991 2d1cA 496 65.08 2ywjA 186 67.10 1icpA 376 68.12 c.1.4.1 62270 1b1cA 181 68.21 c.23.5.2 31212 1o2dA 371 73.23 e.22.1.2 86591 2oogA 287 73.33 2nu8B 388 73.74 1ic8A 194 73.84 a.4.1.1,a.35.1.1 76740,76741 1tibA 269 74.31 c.69.1.17 34738 1hp1A 516 74.44 d.114.1.1,d.159.1.2 70976,70977 1rvgA 305 77.13 c.1.10.2 97920 1gu9A 177 77.94 a.152.1.1 65540 1hlvA 131 78.51 a.4.1.7,a.4.1.7 65854,65855 1jq5A 370 79.01 e.22.1.2 67084 1n4aA 252 79.73 c.92.2.2 85317 3ch0A 272 79.89 1pdnC 128 82.10 a.4.1.5 16047 1ee9A 320 82.54 c.2.1.7,c.58.1.2 30288,33936 1v93A 296 82.61 c.1.23.1 100532 3cecA 104 82.77 1thfD 253 82.87 c.1.2.1 28535 2v8hA 474 83.26 1vi2A 300 85.66 c.2.1.7,c.58.1.5 100726,100727 1km4A 247 85.77 c.1.2.3 72740 2purA 292 86.42 2a6lA 292 86.51 c.1.10.1 126285 1tib 269 88.39 2dorA 311 89.45 c.1.4.1 28593