# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 1.31e-13 a.35.1.5,c.93.1.1 66652,66653 1qpzA 340 1.85e-13 a.35.1.5,c.93.1.1 17097,35673 1vpwA 340 2.14e-13 a.35.1.5,c.93.1.1 17087,35680 1efaA 333 9.25e-13 a.35.1.5,c.93.1.1 17106,35691 2o20A 332 6.18e-11 2fepA 289 1.75e-10 3brqA 296 4.68e-10 1dbqA 289 8.18e-10 c.93.1.1 35666 3c3kA 285 9.29e-10 2rgyA 290 2.58e-09 3ctpA 330 3.36e-09 1jyeA 349 4.33e-09 c.93.1.1 67455 3bblA 287 5.54e-09 1tlfA 301 5.87e-09 c.93.1.1 35687 2iksA 293 6.67e-09 3bilA 348 8.90e-09 3cs3A 277 2.28e-08 2qu7A 288 3.56e-08 1bykA 255 5.26e-08 c.93.1.1 35706 3clkA 290 7.86e-08 2fn9A 290 1.55e-07 2h0aA 276 1.56e-07 2ioyA 283 6.16e-07 2driA 271 9.38e-07 c.93.1.1 35637 2dri 271 1.66e-06 1gudA 288 4.06e-06 c.93.1.1 83326 1jx6A 342 9.14e-06 c.93.1.1 67406 8abp 306 1.28e-05 8abpA 306 1.35e-05 c.93.1.1 35647 1gca 309 1.59e-05 2qvcA 313 1.87e-05 3brsA 289 2.21e-05 3c6qA 311 2.59e-05 2fvyA 309 5.21e-05 c.93.1.1 134227 2h3hA 313 5.46e-05 3d02A 303 6.99e-05 1tjyA 316 0.000421 c.93.1.1 107062 2rjoA 332 0.000530 2fqxA 318 0.3320 1usgA 346 0.4981 c.93.1.1 99864 2liv 344 0.5061 1cjgA 62 0.5465 a.35.1.5 17112 2bjcA 62 0.5480 a.35.1.5 128620 2qh8A 302 0.5872 1z15A 344 0.9558 2hqbA 296 1.290 1peaA 385 2.508 c.93.1.1 35662 1pea 385 3.402 1lccA 51 3.519 a.35.1.5 17110 1wd7A 261 5.240 c.113.1.1 114526 2c5aA 379 5.317 c.2.1.2 129894 1xel 338 7.946 1qydA 313 10.32 c.2.1.2 96583 1ek6A 348 11.02 c.2.1.2 29800 1i3kA 348 12.34 c.2.1.2 61595 1wcwA 261 12.77 1sb8A 352 13.40 c.2.1.2 105410 1j5sA 463 13.77 c.1.9.8 71580 3b8dA 363 13.85 2e4uA 555 14.76 1aq0A 306 14.84 c.1.8.3 28842 2j5bA 348 14.86 1npdA 288 17.59 c.2.1.7,c.58.1.5 80681,80682 1udcA 338 17.81 c.2.1.2 29785 1g5aA 628 17.92 b.71.1.1,c.1.8.1 65152,65153 1edzA 320 17.98 c.2.1.7,c.58.1.2 30287,33935 1e7rA 321 18.36 c.2.1.2 29808 2q02A 272 18.46 2h4aA 325 20.99 2vlbA 251 21.30 2pk3A 321 21.89 1iow 306 21.91 2pzmA 330 22.12 1ewkA 490 22.22 c.93.1.1 35712 1dv1A 449 23.04 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1e6uA 321 23.24 c.2.1.2 29805 2gasA 307 23.83 1bncA 449 24.54 b.84.2.1,c.30.1.1,d.142.1.2 28236,31643,41488 2a84A 300 25.27 c.26.1.4 126389 1he2A 206 25.47 c.2.1.2 60966 1iowA 306 26.03 c.30.1.2,d.142.1.1 31713,41481 1itcA 516 26.78 b.3.1.1,c.1.8.1 83705,83706 3c1oA 321 26.99 1jflA 228 27.07 c.78.2.1,c.78.2.1 71656,71657 1vi2A 300 29.35 c.2.1.7,c.58.1.5 100726,100727 1q1rA 431 29.41 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1jdpA 441 29.83 c.93.1.1 62906 2exxA 306 30.13 2cw6A 298 31.01 2p0oA 372 31.05 2c29D 337 31.91 1bwsA 321 33.29 c.2.1.2 29812 2hk9A 275 33.83 1ee9A 320 34.36 c.2.1.7,c.58.1.2 30288,33936 3ckmA 327 35.02 1n7hA 381 35.15 c.2.1.2 80250 1wdpA 495 35.28 c.1.8.1 120907 1vffA 423 36.01 c.1.8.4 120033 1j08A 226 36.23 c.47.1.2,c.47.1.2 83855,83856 1ihoA 283 37.00 c.26.1.4 62390 2r6jA 318 37.02 1b9zA 516 37.30 b.3.1.1,c.1.8.1 22528,28798 1ituA 369 38.90 c.1.9.7 71423 2ag6A 314 39.89 1adoA 363 40.14 c.1.10.1 29124 1ydnA 295 40.88 1ybdA 239 41.52 c.73.1.3 122884 1qycA 308 41.57 c.2.1.2 96581 1hdoA 206 42.26 c.2.1.2 60965 1v3hA 495 42.77 c.1.8.1 108303 1n2eA 300 43.28 c.26.1.4 85268 1r7aA 504 43.64 b.71.1.1,c.1.8.1 97192,97193 1t2aA 375 44.92 c.2.1.2 99078 1n7kA 234 44.96 c.1.10.1 85374 1jq5A 370 45.12 e.22.1.2 67084 2qghA 425 46.67 1nhsA 447 46.78 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1nvmA 345 47.41 a.5.7.1,c.1.10.5 86249,86250 1db3A 372 47.56 c.2.1.2 29813 2cyaA 364 47.93 2i5gA 325 47.98 1fbaA 361 48.12 c.1.10.1 29120 1wpnA 188 48.39 c.107.1.1 114826 1bsvA 321 48.39 c.2.1.2 29809 1e4iA 447 49.44 c.1.8.4 59225 2p5yA 311 51.03 1r30A 369 51.57 c.1.28.1 96895 1a0cA 438 51.64 c.1.15.3 29529 2ebyA 113 51.69 1xhcA 367 51.85 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2ggsA 273 52.65 3cz8A 319 52.74 2eggA 297 53.17 2pljA 419 53.47 1ta9A 450 53.79 1p1xA 260 53.97 c.1.10.1 104060 1fjhA 257 54.47 c.2.1.2 29870 2dgdA 223 55.30 1byb 495 55.77 2qapA 391 55.85 2akoA 251 55.87 c.73.1.3 126923 1a5cA 368 56.88 c.1.10.1 29148 1tr1A 447 58.59 c.1.8.4 28957 2cygA 312 59.72 c.1.8.3 131025 1m2kA 249 59.78 c.31.1.5 84754 1rpnA 335 61.43 c.2.1.2 97708 1a0dA 440 62.28 c.1.15.3 29533 1lwjA 441 62.42 b.71.1.1,c.1.8.1 74303,74304 2p4hX 322 62.85 1vhqA 232 64.24 c.23.16.2 100696 2v3aA 384 64.24 1lt8A 406 64.96 c.1.26.1 78186 2q88A 257 65.02 1e19A 314 65.63 c.73.1.1 34967 1z45A 699 65.63 b.30.5.4,c.2.1.2 124427,124428 2bllA 345 65.84 c.2.1.2 128733 1tuoA 464 66.14 1vllA 334 67.09 c.2.1.13 108834 1h3fA 432 67.67 c.26.1.1,d.66.1.4 76631,76632 1ii5A 233 68.20 c.94.1.1 62412 1dv2A 452 68.69 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1iciA 256 69.61 c.31.1.5 62266 1q1gA 276 71.52 c.56.2.1 95574 1vliA 385 71.58 b.85.1.1,c.1.10.6 108830,108831 1g94A 448 72.35 b.71.1.1,c.1.8.1 65169,65170 1oc2A 348 72.37 c.2.1.2 92765 1zjaA 557 74.98 1g2iA 166 75.10 c.23.16.2 31438 1jcjA 260 76.22 c.1.10.1 66499 2dhqA 146 76.28 c.23.13.1 31382 1d9eA 284 78.53 c.1.10.4 29195 1nhp 447 78.67 1sgjA 284 78.83 c.1.12.5 105535 1zxxA 319 79.40 1nhpA 447 79.90 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1f44A 324 80.66 a.60.9.1,d.163.1.1 64982,64983 2b69A 343 81.13 c.2.1.2 127974 1fjhB 257 81.95 c.2.1.2 29871 1u9jA 358 82.39 c.2.1.2 113243 1zu0A 529 82.91 2gn4A 344 84.12 2z1mA 345 84.18 2f2hA 773 84.60 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 3ciwA 348 84.67 1ghsA 306 86.95 c.1.8.3 28840 1zaiA 363 87.13 c.1.10.1 124828 2rbkA 261 87.63 2r8cA 426 88.33 1tcvA 287 88.41