# List of top-scoring protein chains for T0441.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2jcgA 332 1.09e-28 2hsgA 332 1.36e-28 a.35.1.5,c.93.1.1 136722,136723 1jh9A 340 1.03e-27 a.35.1.5,c.93.1.1 66710,66711 2pugA 340 1.08e-27 a.35.1.5,c.93.1.1 17088,35683 2pucA 340 1.11e-27 a.35.1.5,c.93.1.1 17094,35684 1qpzA 340 1.28e-27 a.35.1.5,c.93.1.1 17097,35673 1qqbA 340 1.33e-27 a.35.1.5,c.93.1.1 17099,35674 1jftA 340 1.44e-27 a.35.1.5,c.93.1.1 66652,66653 1jfsA 340 1.49e-27 a.35.1.5,c.93.1.1 66650,66651 1vpwA 340 1.60e-27 a.35.1.5,c.93.1.1 17087,35680 3ctpA 330 5.66e-26 2o20A 332 7.86e-26 3bilA 348 1.24e-23 1lbiA 360 1.81e-23 c.93.1.1 35694 1jyfA 349 1.82e-23 c.93.1.1 67456 1efaA 333 1.94e-23 a.35.1.5,c.93.1.1 17106,35691 1jyeA 349 2.05e-23 c.93.1.1 67455 2pe5A 330 3.80e-23 2nzuG 280 9.00e-22 c.93.1.1 138854 1dbqA 289 1.28e-21 c.93.1.1 35666 1jhzA 289 1.49e-21 c.93.1.1 66731 2fepA 289 1.89e-21 2ioyA 283 3.71e-21 3brqA 296 4.93e-20 2gx6A 278 6.90e-19 3bblA 287 1.13e-18 1dbpA 271 1.35e-18 c.93.1.1 35639 2driA 271 1.50e-18 c.93.1.1 35637 1drjA 271 2.07e-18 c.93.1.1 35642 1drkA 271 2.46e-18 c.93.1.1 35638 1ba2A 271 2.69e-18 c.93.1.1 35640 2qu7A 288 6.86e-18 3c3kA 285 9.40e-18 2rgyA 290 1.19e-17 2fn8A 303 1.27e-17 2fn9A 290 1.60e-17 3clkA 290 2.50e-17 1tlfA 301 2.82e-16 c.93.1.1 35687 2p9hA 269 4.81e-16 c.93.1.1 139580 1gudA 288 4.82e-15 c.93.1.1 83326 2iksA 293 7.07e-15 3cs3A 277 1.90e-14 2qvcA 313 3.65e-14 2h3hA 313 5.55e-14 2h0aA 276 6.47e-14 3c6qA 311 8.33e-14 2hphA 316 3.86e-13 c.93.1.1 136652 2ipnA 318 3.99e-13 2fvyA 309 4.03e-13 c.93.1.1 134227 2ipmA 318 4.94e-13 1gcaA 309 6.84e-13 c.93.1.1 35659 3gbpA 307 6.99e-13 c.93.1.1 35661 2iplA 318 7.58e-13 3brsA 289 5.45e-12 1bykA 255 5.79e-11 c.93.1.1 35706 2rjoA 332 2.18e-10 1tjyA 316 1.02e-08 c.93.1.1 107062 1abeA 306 1.10e-08 c.93.1.1 35648 8abpA 306 1.15e-08 c.93.1.1 35647 1bapA 306 1.38e-08 c.93.1.1 35654 3d02A 303 1.40e-08 1zhhA 344 1.18e-06 c.93.1.1 125095 1jx6A 342 1.18e-06 c.93.1.1 67406 2hj9A 339 1.19e-06 c.93.1.1 136538 2bjcA 62 6.72e-06 a.35.1.5 128620 1cjgA 62 9.76e-06 a.35.1.5 17112 1l1mA 62 1.14e-05 a.35.1.5 73474 1lqcA 56 2.98e-05 a.35.1.5 17109 1pruA 56 5.01e-05 a.35.1.5 17104 2fqxA 318 8.54e-05 1lccA 51 9.08e-05 a.35.1.5 17110 1uxcA 65 0.000497 a.35.1.5 17119 2hqbA 296 0.1656 4pfkA 319 0.6125 c.89.1.1 35582 2qh8A 302 0.6155 6pfkA 319 0.6838 c.89.1.1 35583 1mtoA 319 0.8198 c.89.1.1 79458 1ewkA 490 4.291 c.93.1.1 35712 1pfkA 320 5.276 c.89.1.1 35575 2eq5A 228 6.431 1zuaX 317 7.784 2v9dA 343 7.858 1o5iA 249 9.211 c.2.1.2 92499 2ehhA 294 10.14 1uqrA 154 16.70 c.23.13.1 99779 2yy8A 201 18.07 2g7uA 257 19.49 1qnlA 385 20.91 c.93.1.1 35665 1f74A 293 21.66 c.1.10.1 29079 1peaA 385 21.69 c.93.1.1 35662 2qwtA 196 23.40 1tybE 319 27.31 c.26.1.1 31569 1rvv1 154 30.18 1ku9A 152 36.19 a.4.5.36 77544 1y7pA 223 36.40 c.23.1.7,d.58.18.12 122708,122709 2rfgA 297 40.57 1c9wA 315 42.24 c.1.7.1 28699 1dosA 358 42.63 c.1.10.2 29175 1tyaE 319 43.51 c.26.1.1 31570 1w26A 432 44.36 a.223.1.1,d.241.2.1,d.26.1.1 109085,109086,109087 2b0jA 358 47.19 a.100.1.11,c.2.1.6 127639,127640 1xngA 268 51.54 c.26.2.1 122186 1z15A 344 52.79 2j7pD 283 53.93 a.24.13.1,c.37.1.10 138123,138124 2iylD 284 56.14 a.24.13.1,c.37.1.10 137801,137802 2livA 344 56.28 c.93.1.1 35708 1gynA 358 56.31 c.1.10.2 83385 1zxxA 319 56.55 4ts1A 319 56.89 c.26.1.1 31565 1tydE 319 57.96 c.26.1.1 31567 2cf2E 226 60.28 i.26.1.1 130363 2ts1A 419 62.10 c.26.1.1 31564 3b7hA 78 62.14 1agxA 331 63.34 c.88.1.1 35564 1xkyA 301 67.69 c.1.10.1 122094 1p5jA 372 68.15 c.79.1.1 104067 1okkD 303 69.53 a.24.13.1,c.37.1.10 93261,93262 2q9cA 304 69.88 1tycA 319 70.74 c.26.1.1 31568 1rj9A 304 72.03 a.24.13.1,c.37.1.10 97553,97554 2pz0A 252 75.87 1wcxA 261 78.21 2uygA 149 80.71 1yk0A 480 80.84 1yk1A 479 80.89 1b74A 254 81.13 c.78.2.1,c.78.2.1 35264,35265 1jdpA 441 85.36 c.93.1.1 62906 1r0eA 391 85.85 d.144.1.7 111663 1q41A 424 86.04 d.144.1.7 95774 1pyxA 422 86.16 d.144.1.7 95383 1j1bA 420 86.27 d.144.1.7 90758 1q5kA 414 86.63 d.144.1.7 104537 1wsaA 330 87.70 c.88.1.1 35558