# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 2.58e-24 a.35.1.5,c.93.1.1 66652,66653 2fepA 289 4.22e-20 2iksA 293 6.51e-20 2rgyA 290 9.22e-20 3c3kA 285 1.31e-19 2o20A 332 1.40e-19 3ctpA 330 4.13e-19 1dbqA 289 4.70e-19 c.93.1.1 35666 3bblA 287 5.50e-19 3brqA 296 6.67e-19 2ioyA 283 6.98e-19 2driA 271 1.03e-18 c.93.1.1 35637 1jyeA 349 1.04e-18 c.93.1.1 67455 2dri 271 1.40e-18 3bilA 348 1.47e-18 3cs3A 277 1.64e-18 2qu7A 288 2.58e-18 2fn9A 290 3.35e-18 2fvyA 309 4.20e-18 c.93.1.1 134227 3d02A 303 7.51e-18 3brsA 289 7.82e-18 1jx6A 342 1.08e-17 c.93.1.1 67406 1gca 309 1.19e-17 1bykA 255 1.58e-17 c.93.1.1 35706 2h0aA 276 1.65e-17 2h3hA 313 1.95e-17 1tjyA 316 2.01e-17 c.93.1.1 107062 2qvcA 313 2.15e-17 8abpA 306 3.11e-17 c.93.1.1 35647 2rjoA 332 4.90e-17 8abp 306 1.18e-16 1gudA 288 2.28e-16 c.93.1.1 83326 3clkA 290 3.36e-16 3c6qA 311 5.69e-16 2fqxA 318 4.42e-14 2qh8A 302 9.10e-14 2hqbA 296 2.18e-13 1z15A 344 0.000287 1usgA 346 0.000357 c.93.1.1 99864 3ckmA 327 0.000640 1pea 385 0.003603 2h4aA 325 0.01414 1peaA 385 0.02061 c.93.1.1 35662 1dp4A 435 0.05789 c.93.1.1 35710 2e4uA 555 0.07994 1ewkA 490 0.1296 c.93.1.1 35712 1jdpA 441 0.1879 c.93.1.1 62906 2vlbA 251 1.152 1zxxA 319 2.844 2dgdA 223 4.522 3bk2A 562 4.760 1ir6A 424 5.238 c.107.1.2 71342 1pwhA 327 5.260 c.79.1.1 95224 1p5jA 372 6.035 c.79.1.1 104067 2hmcA 344 7.302 2cw6A 298 8.368 2c4wA 176 8.915 1rvgA 305 9.101 c.1.10.2 97920 2v03A 303 10.08 1qh8A 478 10.15 c.92.2.3 35633 2hk0A 309 10.17 1v7cA 351 13.10 c.79.1.1 100446 2fp4B 395 13.17 c.23.4.1,d.142.1.4 133897,133898 2qt3A 403 13.25 1jflA 228 14.26 c.78.2.1,c.78.2.1 71656,71657 1twiA 434 14.44 b.49.2.3,c.1.6.1 107399,107400 2ebyA 113 14.55 2fliA 220 14.79 c.1.2.2 133714 2ffiA 288 15.56 c.1.9.15 133385 1tv8A 340 15.58 c.1.28.3 107352 2r91A 286 18.45 2nu8B 388 18.74 2ehhA 294 19.54 1y7pA 223 19.75 c.23.1.7,d.58.18.12 122708,122709 1xi3A 215 21.70 c.1.3.1 109601 1lt8A 406 22.10 c.1.26.1 78186 2v1xA 591 23.18 1uqrA 154 26.42 c.23.13.1 99779 1h05A 146 26.52 c.23.13.1 76433 1wkvA 389 27.01 c.79.1.1 120989 2rfgA 297 27.02 1nvmA 345 29.74 a.5.7.1,c.1.10.5 86249,86250 3bwgA 239 30.34 2bsxA 253 31.26 c.56.2.1 129128 2b5aA 77 31.54 a.35.1.3 127882 1m1nA 491 31.64 c.92.2.3 78417 2r79A 283 32.54 2gokA 429 33.26 1hw1A 239 33.51 a.4.5.6,a.78.1.1 16111,18441 1zu0A 529 33.77 1v71A 323 34.36 c.79.1.1 119859 2a0nA 265 34.74 c.1.2.1 125961 3cecA 104 35.00 2r7aA 256 35.44 2axqA 467 35.48 1y7yA 74 35.49 a.35.1.3 122729 2ictA 94 35.71 2dxnA 274 35.89 1kcxA 518 36.07 b.92.1.3,c.1.9.6 90953,90954 1nnsA 326 36.40 c.88.1.1 85910 1jxhA 288 36.84 c.72.1.2 67415 2bdqA 224 37.13 1y9qA 192 37.18 a.35.1.8,b.82.1.15 116592,116593 2db3A 434 37.50 1hlvA 131 37.65 a.4.1.7,a.4.1.7 65854,65855 1t2aA 375 38.16 c.2.1.2 99078 1w3iA 293 38.52 c.1.10.1 109152 1vfsA 386 39.65 b.49.2.2,c.1.6.1 108584,108585 2pqmA 343 39.69 2ek5A 129 39.78 4pgaA 337 40.11 c.88.1.1 35565 2pajA 492 40.20 2ia4A 287 41.17 1fx7A 230 41.70 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1wd7A 261 41.84 c.113.1.1 114526 1vzwA 244 41.94 c.1.2.1 120553 1gkpA 458 42.69 b.92.1.3,c.1.9.6 70231,70232 2gasA 307 42.79 1ydyA 356 43.22 c.1.18.3 123006 2gn0A 342 44.27 2a5hA 416 44.38 2ahdA 165 44.43 d.159.1.7 126752 2nuwA 288 45.69 1xmpA 170 46.53 c.23.8.1 115521 1vkfA 188 46.66 c.1.29.1 108656 1t5iA 172 46.67 c.37.1.19 106450 1lst 239 47.06 2r8wA 332 48.83 1ek6A 348 48.97 c.2.1.2 29800 2qq9A 226 50.20 1jysA 242 50.39 c.56.2.1 77216 1hp1A 516 50.81 d.114.1.1,d.159.1.2 70976,70977 1adrA 76 50.95 a.35.1.2 17042 1tcvA 287 50.99 1dnpA 471 51.39 a.99.1.1,c.28.1.1 18775,31630 2bv6A 142 51.64 2q88A 257 51.80 1f8fA 371 51.85 b.35.1.2,c.2.1.1 83246,83247 1mkyA 439 53.87 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2pvuA 272 53.89 1u7pA 164 55.20 c.108.1.17 113095 1h5yA 253 55.50 c.1.2.1 65638 1gtzA 156 55.77 c.23.13.1 70539 1ml4A 308 56.24 c.78.1.1,c.78.1.1 79255,79256 1qwnA 1045 57.05 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2q3bA 313 58.13 2o0tA 467 58.73 2hmvA 144 58.73 c.2.1.9 136615 1hdoA 206 59.56 c.2.1.2 60965 1yacA 208 60.01 c.33.1.3 31757 1je0A 236 60.13 c.56.2.1 66581 2yx0A 342 60.36 1o7jA 327 60.92 c.88.1.1 81140 1u11A 182 62.37 c.23.8.1 107576 1o4vA 183 62.79 c.23.8.1 86628 2yrxA 451 63.22 2z3zA 706 63.49 1ta9A 450 63.56 2di3A 239 64.04 2qahA 303 64.30 1lsuA 147 64.88 c.2.1.9 74250 1z91A 147 64.92 a.4.5.28 124736 1ru8A 232 65.44 c.26.2.1 97849 2exxA 306 66.02 1dqsA 393 66.40 e.22.1.1 43347 1n4aA 252 66.81 c.92.2.2 85317 1b0nA 111 68.78 a.34.1.1,a.35.1.3 17001,17064 1qczA 169 69.17 c.23.8.1 31276 2nwhA 317 70.03 1xrtA 467 72.21 b.92.1.3,c.1.9.6 122258,122259 2g3mA 693 72.67 1dpeA 507 73.22 c.94.1.1 35799 2r1jL 68 73.57 2pljA 419 73.80 2ieeA 271 73.81 2qipA 165 74.72 2gn4A 344 75.13 2bw0A 329 75.38 b.46.1.1,c.65.1.1 129303,129304 1fyeA 229 75.65 c.23.16.4 31477 1utxA 66 75.87 a.35.1.3 108034 2blnA 305 75.99 b.46.1.1,c.65.1.1 128734,128735 3bs3A 76 77.74 1vi2A 300 78.14 c.2.1.7,c.58.1.5 100726,100727 2fb2A 340 78.35 2v9dA 343 78.55 2pexA 153 78.64 1hslA 238 79.01 c.94.1.1 35804 1z45A 699 79.13 b.30.5.4,c.2.1.2 124427,124428 3c1oA 321 79.96 2qf7A 1165 80.17 2bnmA 198 80.72 a.35.1.3,b.82.1.10 128835,128836 2au3A 407 81.28 1l9xA 315 81.90 c.23.16.1 73762 1id1A 153 81.95 c.2.1.9 62286 1wlsA 328 82.38 1h1yA 228 83.15 c.1.2.2 76506 2d73A 738 84.51 1o5kA 306 84.98 c.1.10.1 92504 1o58A 303 85.79 c.79.1.1 92491 1tqjA 230 86.03 c.1.2.2 107228 2hu5A 582 86.03 b.69.7.2,c.69.1.33 136763,136764 1w24A 182 86.26 d.159.1.7 120579 3ch0A 272 86.65 2pzmA 330 86.74 2zcuA 286 87.05 2q5cA 196 87.11 1np7A 489 87.16 a.99.1.1,c.28.1.1 80677,80678 1gy8A 397 87.27 c.2.1.2 83376 2jfgA 445 87.29 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1nsjA 205 87.83 c.1.2.4 28560 2z5lA 511 88.05 2dwcA 433 88.74 1vr5A 547 89.62 c.94.1.1 120437