# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 1.10e-29 a.35.1.5,c.93.1.1 66652,66653 2fepA 289 3.44e-24 2rgyA 290 3.57e-24 2o20A 332 5.78e-24 2iksA 293 1.16e-23 3c3kA 285 2.26e-23 1jyeA 349 3.24e-23 c.93.1.1 67455 3bblA 287 3.92e-23 1dbqA 289 4.30e-23 c.93.1.1 35666 3ctpA 330 5.39e-23 2ioyA 283 1.72e-22 3cs3A 277 1.90e-22 2driA 271 2.31e-22 c.93.1.1 35637 3brqA 296 2.89e-22 3bilA 348 2.95e-22 2dri 271 3.00e-22 2fn9A 290 1.08e-21 3clkA 290 1.31e-21 2qu7A 288 1.98e-21 2fvyA 309 2.02e-21 c.93.1.1 134227 3brsA 289 5.00e-21 3d02A 303 5.06e-21 1jx6A 342 7.15e-21 c.93.1.1 67406 1bykA 255 7.22e-21 c.93.1.1 35706 2h3hA 313 7.57e-21 2qvcA 313 9.06e-21 1gca 309 1.06e-20 8abpA 306 1.43e-20 c.93.1.1 35647 1tjyA 316 2.28e-20 c.93.1.1 107062 2rjoA 332 4.88e-20 2h0aA 276 9.13e-20 8abp 306 1.31e-19 1gudA 288 4.87e-19 c.93.1.1 83326 3c6qA 311 9.02e-19 2fqxA 318 1.99e-17 2qh8A 302 5.18e-16 2hqbA 296 1.43e-15 1usgA 346 5.78e-05 c.93.1.1 99864 1z15A 344 0.000112 1pea 385 0.000367 1peaA 385 0.001185 c.93.1.1 35662 3ckmA 327 0.003619 2e4uA 555 0.01743 1jdpA 441 0.02809 c.93.1.1 62906 1dp4A 435 0.05590 c.93.1.1 35710 2h4aA 325 0.06947 1ewkA 490 0.07510 c.93.1.1 35712 1zxxA 319 1.355 1oywA 523 1.539 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2hmcA 344 1.914 2fp4B 395 2.451 c.23.4.1,d.142.1.4 133897,133898 2ehhA 294 2.588 2vlbA 251 2.883 2rfgA 297 2.947 1pwhA 327 3.369 c.79.1.1 95224 2dgdA 223 4.859 1twiA 434 5.572 b.49.2.3,c.1.6.1 107399,107400 1p5jA 372 5.859 c.79.1.1 104067 3ciwA 348 6.366 2nu8B 388 6.832 2r91A 286 7.713 2purA 292 8.568 1rvgA 305 9.724 c.1.10.2 97920 2c4wA 176 9.97 2fliA 220 10.36 c.1.2.2 133714 2ojpA 292 10.38 2hk0A 309 11.34 1wcwA 261 12.94 2z6iA 332 13.03 2v03A 303 13.66 1vliA 385 14.32 b.85.1.1,c.1.10.6 108830,108831 1xkyA 301 14.58 c.1.10.1 122094 1hl2A 297 14.58 c.1.10.1 83581 1xuuA 349 14.60 b.85.1.1,c.1.10.6 116067,116068 1w3iA 293 14.99 c.1.10.1 109152 1xi3A 215 15.56 c.1.3.1 109601 1lsuA 147 15.97 c.2.1.9 74250 1gpmA 525 16.20 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1j0aA 325 16.80 c.79.1.1 83871 1ir6A 424 16.81 c.107.1.2 71342 1wkvA 389 17.58 c.79.1.1 120989 1bf6A 291 18.42 c.1.9.3 29065 2v9dA 343 18.45 1jflA 228 19.11 c.78.2.1,c.78.2.1 71656,71657 2bdqA 224 20.23 1y7pA 223 20.76 c.23.1.7,d.58.18.12 122708,122709 1v71A 323 21.81 c.79.1.1 119859 3b9qA 302 22.16 1v7cA 351 22.77 c.79.1.1 100446 3bk2A 562 22.86 1wd7A 261 22.92 c.113.1.1 114526 1o5kA 306 23.09 c.1.10.1 92504 1u7pA 164 23.11 c.108.1.17 113095 2v1xA 591 23.46 1k77A 260 24.44 c.1.15.5 72096 1f74A 293 24.66 c.1.10.1 29079 1uqrA 154 24.70 c.23.13.1 99779 2cw6A 298 27.49 1nvmA 345 27.74 a.5.7.1,c.1.10.5 86249,86250 2atsA 292 27.76 c.1.10.1 127306 1lt8A 406 28.08 c.1.26.1 78186 1vfsA 386 28.15 b.49.2.2,c.1.6.1 108584,108585 2ebyA 113 28.24 2ffiA 288 28.47 c.1.9.15 133385 1pl8A 356 29.97 b.35.1.2,c.2.1.1 94878,94879 2r8wA 332 31.09 1tv8A 340 33.37 c.1.28.3 107352 2r7aA 256 33.75 1p77A 272 35.29 c.2.1.7,c.58.1.5 94214,94215 3cg0A 140 37.42 1vi2A 300 37.84 c.2.1.7,c.58.1.5 100726,100727 1lst 239 38.47 1s8nA 205 38.90 c.23.1.1 105374 2zcuA 286 39.34 1ta9A 450 39.94 3d0cA 314 40.33 1tf5A 844 40.49 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2zdrA 349 41.02 1tzjA 338 41.22 c.79.1.1 112868 2nuwA 288 42.11 1wkyA 464 42.20 b.18.1.31,c.1.8.3 120992,120993 3bwgA 239 43.01 1w8sA 263 43.21 c.1.10.1 120744 2b5aA 77 43.64 a.35.1.3 127882 1h1yA 228 43.66 c.1.2.2 76506 2axqA 467 43.95 1jq5A 370 43.95 e.22.1.2 67084 2hmvA 144 45.34 c.2.1.9 136615 2ek5A 129 45.39 1y9qA 192 45.76 a.35.1.8,b.82.1.15 116592,116593 2g3mA 693 46.35 1jysA 242 46.61 c.56.2.1 77216 2f48A 555 47.18 c.89.1.1 132915 1nnsA 326 48.06 c.88.1.1 85910 1o58A 303 48.17 c.79.1.1 92491 2uz1A 563 48.43 1e5xA 486 48.94 c.79.1.1 59283 1zu0A 529 49.02 1oltA 457 50.04 c.1.28.2 93334 1yb5A 351 50.21 b.35.1.2,c.2.1.1 116601,116602 1y7yA 74 50.51 a.35.1.3 122729 1j0dA 341 50.59 c.79.1.1 83902 2qipA 165 50.61 2oqrA 230 50.87 1hw1A 239 51.30 a.4.5.6,a.78.1.1 16111,18441 1zlqA 502 52.53 c.94.1.1 125253 1qh8A 478 52.66 c.92.2.3 35633 3cyjA 372 52.90 1udcA 338 53.07 c.2.1.2 29785 1hlvA 131 53.32 a.4.1.7,a.4.1.7 65854,65855 1adrA 76 53.88 a.35.1.2 17042 1fx7A 230 53.96 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1b0aA 288 54.18 c.2.1.7,c.58.1.2 30286,33934 2r79A 283 54.85 1twdA 256 55.76 c.1.30.1 107397 2zayA 147 55.88 1ru8A 232 55.90 c.26.2.1 97849 1z91A 147 56.76 a.4.5.28 124736 2dxnA 274 57.31 1tqjA 230 57.50 c.1.2.2 107228 1z45A 699 57.78 b.30.5.4,c.2.1.2 124427,124428 1duvG 333 58.51 c.78.1.1,c.78.1.1 35228,35229 1jr2A 286 58.75 c.113.1.1 67111 1dpeA 507 59.14 c.94.1.1 35799 2ictA 94 59.83 1qopA 268 59.88 c.1.2.4 28570 1zh2A 121 60.38 c.23.1.1 125069 2qzjA 136 60.45 2di3A 239 60.72 2pz0A 252 62.29 2q88A 257 62.34 1t5iA 172 62.80 c.37.1.19 106450 2nwhA 317 63.21 1ydnA 295 63.41 1v93A 296 64.81 c.1.23.1 100532 2q3bA 313 64.90 2qq9A 226 66.64 2gokA 429 68.28 2pr7A 137 68.89 2exxA 306 69.04 2dqwA 294 70.21 2qt3A 403 70.73 3cecA 104 70.83 2pgfA 371 72.12 1tezA 474 72.16 a.99.1.1,c.28.1.1 112409,112410 1kbjA 412 72.54 c.1.4.1 72280 1mkyA 439 73.06 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1hp1A 516 73.17 d.114.1.1,d.159.1.2 70976,70977 2o0tA 467 73.65 3by6A 126 74.33 1gtzA 156 74.33 c.23.13.1 70539 1te2A 226 74.77 c.108.1.6 106792 1b0nA 111 74.89 a.34.1.1,a.35.1.3 17001,17064 2db3A 434 77.34 1nytA 271 77.49 c.2.1.7,c.58.1.5 86417,86418 2f6kA 307 78.04 c.1.9.15 133047 2nvaA 372 78.19 1m1nA 491 78.52 c.92.2.3 78417 1gkpA 458 78.65 b.92.1.3,c.1.9.6 70231,70232 2a9oA 120 79.56 c.23.1.1 126444 2gdqA 382 79.65 c.1.11.2,d.54.1.1 135020,135021 1ve1A 304 79.93 c.79.1.1 120007 1f8fA 371 80.30 b.35.1.2,c.2.1.1 83246,83247 2pexA 153 80.87 1rkd 309 81.61 1rj9A 304 82.71 a.24.13.1,c.37.1.10 97553,97554 2gn0A 342 82.89 1utxA 66 83.35 a.35.1.3 108034 2d73A 738 83.48 1t4bA 367 83.53 c.2.1.3,d.81.1.1 106406,106407 1yx1A 264 83.86 c.1.15.7 124169 2r1jL 68 83.92 1vkfA 188 84.06 c.1.29.1 108656 1hslA 238 84.28 c.94.1.1 35804 2oztA 332 84.37 2bsxA 253 84.47 c.56.2.1 129128 1kjqA 391 84.68 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1o17A 345 85.17 a.46.2.1,c.27.1.1 80765,80766 1rkdA 309 86.73 c.72.1.1 34928 1kfcA 268 87.08 c.1.2.4 77371 1c30B 382 87.56 c.8.3.1,c.23.16.1 30736,31413 2hbvA 334 88.08 c.1.9.15 136320 2pvuA 272 88.39 1xfcA 384 88.76