# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 6.22e-29 a.35.1.5,c.93.1.1 66652,66653 2fepA 289 5.38e-24 2rgyA 290 9.80e-24 2iksA 293 1.57e-23 3c3kA 285 3.30e-23 2o20A 332 3.58e-23 3bblA 287 1.44e-22 1jyeA 349 1.45e-22 c.93.1.1 67455 1dbqA 289 2.11e-22 c.93.1.1 35666 3cs3A 277 3.06e-22 2ioyA 283 3.21e-22 3ctpA 330 3.53e-22 3brqA 296 5.20e-22 2driA 271 5.35e-22 c.93.1.1 35637 2dri 271 6.31e-22 3bilA 348 1.17e-21 3d02A 303 1.93e-21 2qu7A 288 2.62e-21 1jx6A 342 2.84e-21 c.93.1.1 67406 2fvyA 309 3.44e-21 c.93.1.1 134227 2fn9A 290 3.71e-21 3brsA 289 4.87e-21 1tjyA 316 8.87e-21 c.93.1.1 107062 1gca 309 1.12e-20 2h3hA 313 1.24e-20 1bykA 255 1.33e-20 c.93.1.1 35706 2qvcA 313 1.58e-20 2h0aA 276 2.77e-20 8abpA 306 3.22e-20 c.93.1.1 35647 2rjoA 332 5.22e-20 8abp 306 3.35e-19 3c6qA 311 4.51e-19 1gudA 288 6.70e-19 c.93.1.1 83326 3clkA 290 1.26e-18 2fqxA 318 3.35e-17 2hqbA 296 1.67e-16 2qh8A 302 6.84e-16 1usgA 346 3.83e-05 c.93.1.1 99864 1z15A 344 4.91e-05 1pea 385 0.000383 1peaA 385 0.000699 c.93.1.1 35662 3ckmA 327 0.000715 2h4aA 325 0.01323 2e4uA 555 0.01513 1ewkA 490 0.01740 c.93.1.1 35712 1jdpA 441 0.03411 c.93.1.1 62906 1dp4A 435 0.06200 c.93.1.1 35710 1zxxA 319 0.3173 2ehhA 294 1.166 2hmcA 344 1.994 2rfgA 297 2.576 2vlbA 251 3.573 1p5jA 372 4.304 c.79.1.1 104067 2ojpA 292 4.618 1pwhA 327 4.849 c.79.1.1 95224 2dgdA 223 5.623 2purA 292 6.182 2cw6A 298 6.676 2v03A 303 8.069 2hk0A 309 9.439 2v9dA 343 9.766 1oywA 523 10.58 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1wd7A 261 11.99 c.113.1.1 114526 1wcwA 261 12.36 2v1xA 591 12.63 2nu8B 388 13.31 1rvgA 305 13.46 c.1.10.2 97920 3ciwA 348 13.67 2dxnA 274 14.40 2qt3A 403 15.64 2fliA 220 15.66 c.1.2.2 133714 3bk2A 562 16.22 1y7pA 223 16.29 c.23.1.7,d.58.18.12 122708,122709 1o5kA 306 16.91 c.1.10.1 92504 2r8wA 332 17.31 2ebyA 113 18.35 1w3iA 293 19.23 c.1.10.1 109152 1twiA 434 19.82 b.49.2.3,c.1.6.1 107399,107400 2pqmA 343 19.86 2r91A 286 20.37 1u7pA 164 20.56 c.108.1.17 113095 1xkyA 301 20.58 c.1.10.1 122094 2higA 487 20.75 3d0cA 314 22.89 1ir6A 424 23.04 c.107.1.2 71342 1hl2A 297 23.13 c.1.10.1 83581 1wkvA 389 23.64 c.79.1.1 120989 2fp4B 395 23.77 c.23.4.1,d.142.1.4 133897,133898 1v7cA 351 25.01 c.79.1.1 100446 2q3bA 313 25.68 2atsA 292 26.00 c.1.10.1 127306 1jr2A 286 26.22 c.113.1.1 67111 2ffiA 288 26.42 c.1.9.15 133385 1tv8A 340 26.87 c.1.28.3 107352 1qh8A 478 27.53 c.92.2.3 35633 1qopA 268 27.81 c.1.2.4 28570 2q88A 257 29.44 1xi3A 215 29.49 c.1.3.1 109601 1uqrA 154 29.57 c.23.13.1 99779 1hlvA 131 30.36 a.4.1.7,a.4.1.7 65854,65855 1sr9A 644 30.42 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1lsuA 147 30.97 c.2.1.9 74250 2c4wA 176 31.78 2b5aA 77 32.18 a.35.1.3 127882 3cecA 104 32.98 1ta9A 450 33.06 1lst 239 34.90 1nvmA 345 34.91 a.5.7.1,c.1.10.5 86249,86250 1vfsA 386 37.17 b.49.2.2,c.1.6.1 108584,108585 1k77A 260 37.66 c.1.15.5 72096 1jflA 228 37.78 c.78.2.1,c.78.2.1 71656,71657 3cyjA 372 38.24 2a5hA 416 39.37 2ia4A 287 39.37 3ch0A 272 39.41 2ek5A 129 39.46 2bdqA 224 39.48 1dqsA 393 39.64 e.22.1.1 43347 1gkpA 458 39.83 b.92.1.3,c.1.9.6 70231,70232 1jxhA 288 40.22 c.72.1.2 67415 3beoA 375 41.03 2r7aA 256 41.24 1vzwA 244 41.48 c.1.2.1 120553 1hw1A 239 44.20 a.4.5.6,a.78.1.1 16111,18441 1tzjA 338 45.29 c.79.1.1 112868 1t5iA 172 45.69 c.37.1.19 106450 1lt8A 406 45.99 c.1.26.1 78186 3bwgA 239 46.21 2ictA 94 46.27 1o58A 303 47.95 c.79.1.1 92491 2r79A 283 48.77 1y7yA 74 48.90 a.35.1.3 122729 2a22A 215 49.24 d.159.1.7 126025 2dztA 248 49.27 2pkeA 251 49.28 3cg4A 142 50.08 1w24A 182 50.22 d.159.1.7 120579 1geqA 248 51.01 c.1.2.4 28589 2di3A 239 51.48 1t2aA 375 51.99 c.2.1.2 99078 1tcvA 287 52.15 1z45A 699 52.83 b.30.5.4,c.2.1.2 124427,124428 1mkyA 439 53.05 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1qh8B 519 53.26 c.92.2.3 35634 1hp1A 516 53.30 d.114.1.1,d.159.1.2 70976,70977 2nuwA 288 53.70 2pvuA 272 53.85 2f48A 555 54.80 c.89.1.1 132915 1rrmA 386 54.90 e.22.1.2 105081 2ieeA 271 54.92 1gtzA 156 55.16 c.23.13.1 70539 1uteA 313 55.87 d.159.1.1 42078 1jq5A 370 55.91 e.22.1.2 67084 1h05A 146 56.98 c.23.13.1 76433 2z1aA 552 57.35 1adrA 76 58.09 a.35.1.2 17042 1wy5A 317 59.02 c.26.2.5,d.229.1.1 121428,121429 1y9qA 192 59.60 a.35.1.8,b.82.1.15 116592,116593 1f74A 293 63.45 c.1.10.1 29079 2hmvA 144 63.54 c.2.1.9 136615 2v3gA 283 65.05 1nnsA 326 65.19 c.88.1.1 85910 2og2A 359 65.21 1ve1A 304 66.06 c.79.1.1 120007 2qq9A 226 67.09 1vljA 407 67.13 e.22.1.2 108832 1tezA 474 67.38 a.99.1.1,c.28.1.1 112409,112410 1m1nB 522 68.15 c.92.2.3 78418 1z91A 147 68.45 a.4.5.28 124736 1wkyA 464 68.65 b.18.1.31,c.1.8.3 120992,120993 1ve5A 311 69.18 c.79.1.1 120013 2gn0A 342 69.91 1jysA 242 70.48 c.56.2.1 77216 1v4vA 376 70.73 c.87.1.3 100313 1utxA 66 70.74 a.35.1.3 108034 1zuwA 272 70.91 2o1mA 258 71.14 1tqjA 230 72.01 c.1.2.2 107228 1yb5A 351 72.52 b.35.1.2,c.2.1.1 116601,116602 1duvG 333 72.54 c.78.1.1,c.78.1.1 35228,35229 1c30B 382 72.70 c.8.3.1,c.23.16.1 30736,31413 2oogA 287 72.74 1ejbA 168 73.85 c.16.1.1 59417 1b0nA 111 74.16 a.34.1.1,a.35.1.3 17001,17064 2q5cA 196 75.09 1tq4A 413 76.21 c.37.1.8 107201 1gvhA 396 76.82 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 3b9qA 302 76.84 2v7pA 310 76.97 1m1nA 491 77.38 c.92.2.3 78417 3cdhA 155 78.32 1v71A 323 78.53 c.79.1.1 119859 2nwhA 317 78.69 1vkfA 188 79.74 c.1.29.1 108656 1x1tA 260 80.33 c.2.1.2 121597 1twdA 256 80.57 c.1.30.1 107397 4pgaA 337 83.61 c.88.1.1 35565 1xfcA 384 83.87 1eziA 228 83.89 c.68.1.13 34512 1zccA 248 83.90 c.1.18.3 124903 2qddA 378 84.34 1c4oA 664 84.87 c.37.1.19,c.37.1.19 32415,32416 2r1jL 68 85.06 2gruA 368 85.19 1dnpA 471 85.26 a.99.1.1,c.28.1.1 18775,31630 2yrxA 451 85.63 2jfnA 285 86.64 1pl8A 356 87.48 b.35.1.2,c.2.1.1 94878,94879 1j0aA 325 87.57 c.79.1.1 83871 2bnmA 198 87.59 a.35.1.3,b.82.1.10 128835,128836 1krhA 338 87.63 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1vj0A 380 87.92 b.35.1.2,c.2.1.1 100786,100787 2axqA 467 88.87 2bv6A 142 88.97 1d2mA 665 89.53 c.37.1.19,c.37.1.19 32417,32418