# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 4.09e-29 a.35.1.5,c.93.1.1 66652,66653 2fepA 289 3.83e-24 2rgyA 290 6.78e-24 2iksA 293 9.23e-24 3c3kA 285 2.39e-23 2o20A 332 2.81e-23 1jyeA 349 8.74e-23 c.93.1.1 67455 1dbqA 289 1.11e-22 c.93.1.1 35666 3bblA 287 1.26e-22 3cs3A 277 2.89e-22 3ctpA 330 3.12e-22 2ioyA 283 3.17e-22 3brqA 296 3.59e-22 2driA 271 5.44e-22 c.93.1.1 35637 2dri 271 5.96e-22 3bilA 348 1.06e-21 3d02A 303 1.38e-21 2qu7A 288 1.97e-21 1jx6A 342 2.13e-21 c.93.1.1 67406 2fvyA 309 2.65e-21 c.93.1.1 134227 2fn9A 290 2.67e-21 3brsA 289 4.51e-21 1tjyA 316 7.37e-21 c.93.1.1 107062 1gca 309 8.52e-21 1bykA 255 1.02e-20 c.93.1.1 35706 2h3hA 313 1.11e-20 2qvcA 313 1.25e-20 2h0aA 276 2.21e-20 8abpA 306 2.89e-20 c.93.1.1 35647 2rjoA 332 4.92e-20 8abp 306 2.69e-19 3c6qA 311 4.24e-19 1gudA 288 4.55e-19 c.93.1.1 83326 3clkA 290 8.54e-19 2fqxA 318 1.96e-17 2hqbA 296 1.13e-16 2qh8A 302 6.61e-16 1usgA 346 4.72e-05 c.93.1.1 99864 1z15A 344 7.89e-05 1pea 385 0.000400 3ckmA 327 0.000612 1peaA 385 0.000681 c.93.1.1 35662 2h4aA 325 0.01136 2e4uA 555 0.01461 1ewkA 490 0.01873 c.93.1.1 35712 1jdpA 441 0.04018 c.93.1.1 62906 1dp4A 435 0.06022 c.93.1.1 35710 1zxxA 319 0.3667 2ehhA 294 1.052 2hmcA 344 1.834 2rfgA 297 1.978 2ojpA 292 3.626 2vlbA 251 4.144 1p5jA 372 4.402 c.79.1.1 104067 2purA 292 4.519 1pwhA 327 4.756 c.79.1.1 95224 2dgdA 223 7.195 2cw6A 298 7.627 2v9dA 343 9.576 2dxnA 274 9.98 2v03A 303 10.49 2hk0A 309 10.95 1oywA 523 11.69 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1y7pA 223 12.57 c.23.1.7,d.58.18.12 122708,122709 3ciwA 348 12.95 1rvgA 305 13.37 c.1.10.2 97920 1wcwA 261 13.69 1o5kA 306 14.64 c.1.10.1 92504 2r91A 286 14.66 1wd7A 261 15.05 c.113.1.1 114526 2higA 487 15.09 2fp4B 395 15.88 c.23.4.1,d.142.1.4 133897,133898 2v1xA 591 16.27 2qt3A 403 16.93 2r8wA 332 17.10 1xkyA 301 17.46 c.1.10.1 122094 1ir6A 424 17.52 c.107.1.2 71342 3bk2A 562 17.75 3d0cA 314 17.91 1w3iA 293 18.14 c.1.10.1 109152 2nu8B 388 18.41 1u7pA 164 18.58 c.108.1.17 113095 2ebyA 113 21.09 1hl2A 297 21.45 c.1.10.1 83581 2atsA 292 21.68 c.1.10.1 127306 2pqmA 343 22.29 1jr2A 286 22.99 c.113.1.1 67111 2c4wA 176 24.15 2fliA 220 27.36 c.1.2.2 133714 1twiA 434 27.51 b.49.2.3,c.1.6.1 107399,107400 1lsuA 147 28.21 c.2.1.9 74250 1uqrA 154 28.35 c.23.13.1 99779 1v7cA 351 29.29 c.79.1.1 100446 1qh8A 478 29.97 c.92.2.3 35633 1hlvA 131 30.27 a.4.1.7,a.4.1.7 65854,65855 1sr9A 644 31.29 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 2q3bA 313 31.92 1tv8A 340 32.21 c.1.28.3 107352 3cyjA 372 33.37 1dqsA 393 35.48 e.22.1.1 43347 1qopA 268 35.90 c.1.2.4 28570 2ia4A 287 36.55 2ek5A 129 37.18 3cecA 104 37.96 2ffiA 288 39.60 c.1.9.15 133385 1xi3A 215 39.64 c.1.3.1 109601 2a5hA 416 40.01 2b5aA 77 40.03 a.35.1.3 127882 1gkpA 458 40.28 b.92.1.3,c.1.9.6 70231,70232 1vfsA 386 40.94 b.49.2.2,c.1.6.1 108584,108585 2r79A 283 41.12 2q88A 257 41.89 2ieeA 271 42.32 2pkeA 251 42.73 1w24A 182 43.46 d.159.1.7 120579 1t5iA 172 44.09 c.37.1.19 106450 2a22A 215 44.10 d.159.1.7 126025 1lt8A 406 44.17 c.1.26.1 78186 1k77A 260 44.24 c.1.15.5 72096 1wkvA 389 44.58 c.79.1.1 120989 2z1aA 552 44.81 1qh8B 519 45.46 c.92.2.3 35634 1uteA 313 45.79 d.159.1.1 42078 2r7aA 256 45.82 1ta9A 450 46.45 1zuwA 272 46.76 1vzwA 244 46.88 c.1.2.1 120553 2nuwA 288 47.32 1gtzA 156 47.75 c.23.13.1 70539 1h05A 146 48.04 c.23.13.1 76433 1hp1A 516 48.37 d.114.1.1,d.159.1.2 70976,70977 3cg4A 142 48.56 3ch0A 272 49.14 3bwgA 239 49.20 1o58A 303 49.48 c.79.1.1 92491 1mkyA 439 49.68 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1y7yA 74 49.71 a.35.1.3 122729 1f74A 293 49.92 c.1.10.1 29079 1lst 239 50.78 2pvuA 272 51.04 1nvmA 345 51.10 a.5.7.1,c.1.10.5 86249,86250 1z45A 699 51.42 b.30.5.4,c.2.1.2 124427,124428 3beoA 375 51.44 1jflA 228 51.46 c.78.2.1,c.78.2.1 71656,71657 1jxhA 288 52.02 c.72.1.2 67415 2v7pA 310 53.85 2dztA 248 54.19 2gn0A 342 54.39 2ictA 94 54.81 2bdqA 224 55.91 2di3A 239 56.07 1tzjA 338 58.80 c.79.1.1 112868 1v4vA 376 59.69 c.87.1.3 100313 1y9qA 192 60.59 a.35.1.8,b.82.1.15 116592,116593 1hw1A 239 60.70 a.4.5.6,a.78.1.1 16111,18441 1x1tA 260 60.92 c.2.1.2 121597 2axqA 467 61.70 1geqA 248 62.48 c.1.2.4 28589 1rrmA 386 62.66 e.22.1.2 105081 1eziA 228 62.81 c.68.1.13 34512 1ve5A 311 63.20 c.79.1.1 120013 1yb5A 351 63.29 b.35.1.2,c.2.1.1 116601,116602 1e8cA 498 64.68 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1t2aA 375 65.25 c.2.1.2 99078 2qddA 378 66.58 1jysA 242 67.30 c.56.2.1 77216 1ve1A 304 68.51 c.79.1.1 120007 1y7lA 316 68.81 c.79.1.1 122695 2db3A 434 70.12 2qq9A 226 70.14 1v71A 323 70.42 c.79.1.1 119859 2v3gA 283 70.53 1wkyA 464 70.98 b.18.1.31,c.1.8.3 120992,120993 1ejbA 168 71.02 c.16.1.1 59417 1adrA 76 71.70 a.35.1.2 17042 1jq5A 370 72.31 e.22.1.2 67084 1qgoA 264 73.36 c.92.1.2 35596 1tcvA 287 73.57 1m1nA 491 74.33 c.92.2.3 78417 1tezA 474 74.52 a.99.1.1,c.28.1.1 112409,112410 2hmvA 144 74.69 c.2.1.9 136615 1tqjA 230 74.93 c.1.2.2 107228 2ahdA 165 75.28 d.159.1.7 126752 2o1mA 258 76.03 1hyeA 313 76.80 c.2.1.5,d.162.1.1 61400,61401 1dnpA 471 76.96 a.99.1.1,c.28.1.1 18775,31630 1m1nB 522 77.70 c.92.2.3 78418 1wy5A 317 79.16 c.26.2.5,d.229.1.1 121428,121429 1vj0A 380 79.99 b.35.1.2,c.2.1.1 100786,100787 1jayA 212 80.29 c.2.1.6 66478 2og2A 359 80.37 2f48A 555 80.68 c.89.1.1 132915 1f2dA 341 81.09 c.79.1.1 35298 1pl8A 356 81.48 b.35.1.2,c.2.1.1 94878,94879 2nwhA 317 83.21 1s8nA 205 83.50 c.23.1.1 105374 1b0nA 111 83.62 a.34.1.1,a.35.1.3 17001,17064 1b0aA 288 83.75 c.2.1.7,c.58.1.2 30286,33934 1nnsA 326 83.78 c.88.1.1 85910 2r25B 133 83.95 2oqrA 230 83.97 2bv6A 142 84.54 2gzmA 267 84.59 1ur4A 399 85.15 c.1.8.3 113402 2q71A 356 86.18 1utxA 66 86.45 a.35.1.3 108034 3b9qA 302 86.47 1oltA 457 86.95 c.1.28.2 93334 1udcA 338 87.00 c.2.1.2 29785 1vi2A 300 87.06 c.2.1.7,c.58.1.5 100726,100727 2jfnA 285 87.51 1v7bA 185 87.72 a.4.1.9,a.121.1.1 119861,119862 1vkfA 188 87.96 c.1.29.1 108656 1q9uA 130 88.83 d.129.7.1 96314 3cdhA 155 89.01 2oogA 287 89.19