# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 1.90e-30 a.35.1.5,c.93.1.1 66652,66653 2fepA 289 4.11e-25 2iksA 293 9.42e-25 2rgyA 290 1.60e-24 3c3kA 285 1.98e-24 2o20A 332 2.63e-24 1dbqA 289 9.23e-24 c.93.1.1 35666 1jyeA 349 1.00e-23 c.93.1.1 67455 3bblA 287 1.19e-23 3brqA 296 2.37e-23 2ioyA 283 2.63e-23 2driA 271 5.67e-23 c.93.1.1 35637 2dri 271 7.55e-23 3ctpA 330 8.73e-23 2fn9A 290 1.03e-22 3clkA 290 1.18e-22 3bilA 348 1.26e-22 2qu7A 288 2.32e-22 3cs3A 277 3.24e-22 2fvyA 309 3.65e-22 c.93.1.1 134227 3d02A 303 5.92e-22 3brsA 289 8.68e-22 2h0aA 276 1.35e-21 1bykA 255 1.65e-21 c.93.1.1 35706 1gca 309 1.78e-21 8abpA 306 2.49e-21 c.93.1.1 35647 1jx6A 342 5.42e-21 c.93.1.1 67406 2qvcA 313 7.05e-21 2h3hA 313 7.24e-21 1tjyA 316 1.05e-20 c.93.1.1 107062 8abp 306 1.54e-20 1gudA 288 3.62e-20 c.93.1.1 83326 2rjoA 332 8.29e-20 3c6qA 311 4.28e-19 2fqxA 318 6.78e-18 2qh8A 302 4.84e-17 2hqbA 296 7.49e-16 1usgA 346 2.31e-05 c.93.1.1 99864 1z15A 344 2.64e-05 1peaA 385 0.000696 c.93.1.1 35662 1pea 385 0.000878 3ckmA 327 0.001146 2h4aA 325 0.008397 1jdpA 441 0.01026 c.93.1.1 62906 1dp4A 435 0.01678 c.93.1.1 35710 2e4uA 555 0.02020 1ewkA 490 0.06128 c.93.1.1 35712 2vlbA 251 0.2687 2hmcA 344 2.230 2dgdA 223 3.813 1y7pA 223 4.616 c.23.1.7,d.58.18.12 122708,122709 2c4wA 176 4.819 2ebyA 113 7.252 3cecA 104 7.648 1uqrA 154 7.683 c.23.13.1 99779 1jflA 228 9.091 c.78.2.1,c.78.2.1 71656,71657 1kbjA 412 9.350 c.1.4.1 72280 2qt3A 403 9.694 2fp4B 395 10.85 c.23.4.1,d.142.1.4 133897,133898 2q88A 257 12.04 2r7aA 256 12.16 2ictA 94 12.56 1h05A 146 13.30 c.23.13.1 76433 1twiA 434 13.56 b.49.2.3,c.1.6.1 107399,107400 1gtzA 156 13.66 c.23.13.1 70539 1sbyA 254 14.54 c.2.1.2 118930 1wd7A 261 14.86 c.113.1.1 114526 2ehhA 294 15.71 2ho4A 259 15.94 1jxhA 288 16.13 c.72.1.2 67415 2ia4A 287 17.30 1h5yA 253 17.34 c.1.2.1 65638 2gokA 429 18.05 1rvgA 305 18.65 c.1.10.2 97920 2jfnA 285 18.75 3cyjA 372 19.11 2bdqA 224 19.18 1lsuA 147 19.22 c.2.1.9 74250 1y7yA 74 19.81 a.35.1.3 122729 2o6lA 170 20.19 1c30B 382 20.47 c.8.3.1,c.23.16.1 30736,31413 1vljA 407 20.59 e.22.1.2 108832 2db3A 434 20.91 1k77A 260 21.23 c.1.15.5 72096 1lst 239 21.56 1iowA 306 21.60 c.30.1.2,d.142.1.1 31713,41481 1ta9A 450 21.90 1us5A 314 21.91 c.94.1.1 99856 2nu8B 388 22.32 1zu0A 529 22.34 1twdA 256 23.57 c.1.30.1 107397 2b5aA 77 23.94 a.35.1.3 127882 2r8wA 332 23.98 2qq9A 226 24.32 1o5kA 306 24.82 c.1.10.1 92504 1wcwA 261 24.85 2pjuA 225 25.34 1gpmA 525 26.13 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1utxA 66 28.14 a.35.1.3 108034 1lt8A 406 29.45 c.1.26.1 78186 1b0nA 111 29.56 a.34.1.1,a.35.1.3 17001,17064 1b74A 254 29.72 c.78.2.1,c.78.2.1 35264,35265 1qh8A 478 30.79 c.92.2.3 35633 1fyeA 229 32.35 c.23.16.4 31477 2fliA 220 32.64 c.1.2.2 133714 1oywA 523 32.82 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2nuwA 288 33.50 2a0nA 265 33.58 c.1.2.1 125961 1pl8A 356 33.59 b.35.1.2,c.2.1.1 94878,94879 2v9dA 343 33.75 2o1mA 258 33.80 1adrA 76 33.90 a.35.1.2 17042 1yixA 265 34.63 c.1.9.12 123371 1pwhA 327 34.90 c.79.1.1 95224 2v1xA 591 36.10 1vliA 385 37.53 b.85.1.1,c.1.10.6 108830,108831 3bs3A 76 38.51 1zuwA 272 39.20 1t5iA 172 40.02 c.37.1.19 106450 3bk2A 562 40.08 2ek5A 129 40.81 1n7kA 234 40.90 c.1.10.1 85374 2jfuA 291 41.02 2r1jL 68 41.73 1u0sY 118 42.46 c.23.1.1 107566 1o7jA 327 42.86 c.88.1.1 81140 2pz0A 252 43.03 1edzA 320 44.33 c.2.1.7,c.58.1.2 30287,33935 1b0aA 288 44.59 c.2.1.7,c.58.1.2 30286,33934 2dqsA 995 44.80 2nwhA 317 45.04 1l9xA 315 45.12 c.23.16.1 73762 2eq5A 228 45.12 2oycA 306 45.21 1vzwA 244 45.26 c.1.2.1 120553 3cg4A 142 46.15 1iow 306 46.26 3bwgA 239 46.46 2cygA 312 46.58 c.1.8.3 131025 2hmvA 144 47.29 c.2.1.9 136615 2h09A 155 47.44 2qzjA 136 47.77 3cmgA 667 47.80 1hlvA 131 48.69 a.4.1.7,a.4.1.7 65854,65855 1dqsA 393 49.34 e.22.1.1 43347 3b7hA 78 51.94 1vi2A 300 52.07 c.2.1.7,c.58.1.5 100726,100727 2q5cA 196 52.12 1on2A 142 53.90 a.4.5.24,a.76.1.1 87103,87104 2r91A 286 53.96 1tmyA 120 54.00 c.23.1.1 31083 1rlmA 271 55.52 c.108.1.10 111860 2oryA 346 55.80 2r79A 283 55.82 2jfzA 255 55.88 2g09A 297 56.29 2a22A 215 57.08 d.159.1.7 126025 1k1xA 659 57.09 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1zhaA 267 57.37 2ahdA 165 57.55 d.159.1.7 126752 1wpgA 994 57.60 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 3be7A 408 58.01 1a9xB 379 58.11 c.8.3.1,c.23.16.1 30732,31409 1qczA 169 58.98 c.23.8.1 31276 1to2E 281 59.67 c.41.1.1 112595 1nvmA 345 59.81 a.5.7.1,c.1.10.5 86249,86250 1jr2A 286 60.01 c.113.1.1 67111 3by6A 126 60.22 1bh6A 274 61.39 c.41.1.1 32487 1xmpA 170 62.30 c.23.8.1 115521 1o4vA 183 62.46 c.23.8.1 86628 1nnsA 326 62.48 c.88.1.1 85910 1k20A 310 62.94 c.107.1.1 68027 1zh2A 121 64.17 c.23.1.1 125069 1nytA 271 64.50 c.2.1.7,c.58.1.5 86417,86418 1thfD 253 65.26 c.1.2.1 28535 1iibA 106 65.48 c.44.2.1 32648 2a9oA 120 65.80 c.23.1.1 126444 2q09A 416 65.83 1je0A 236 65.97 c.56.2.1 66581 1udcA 338 66.03 c.2.1.2 29785 2axqA 467 66.98 2bv6A 142 67.44 1u11A 182 67.61 c.23.8.1 107576 2di3A 239 67.89 1nu5A 370 67.92 c.1.11.2,d.54.1.1 92183,92184 1xi3A 215 68.26 c.1.3.1 109601 1v71A 323 68.33 c.79.1.1 119859 1o58A 303 68.78 c.79.1.1 92491 1gciA 269 69.62 c.41.1.1 32503 1rkdA 309 69.88 c.72.1.1 34928 2p4gA 270 70.13 1dpeA 507 70.29 c.94.1.1 35799 1zjjA 263 71.03 1krhA 338 71.05 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 2dskA 311 71.08 2o0tA 467 71.19 2pvuA 272 71.25 1gkpA 458 71.48 b.92.1.3,c.1.9.6 70231,70232 1s8nA 205 72.74 c.23.1.1 105374 2fssA 365 72.89 1m1nA 491 73.46 c.92.2.3 78417 1xuuA 349 73.62 b.85.1.1,c.1.10.6 116067,116068 2p0iA 456 73.81 1zxxA 319 73.95 1n4aA 252 74.16 c.92.2.2 85317 2o7iA 592 74.65 2pmqA 377 74.77 3cjnA 162 74.91 1fx7A 230 75.75 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2b82A 211 76.68 c.108.1.12 128057 1p5jA 372 77.12 c.79.1.1 104067 1u8tA 129 77.40 c.23.1.1 113192 1xhfA 123 78.77 c.23.1.1 122003 1r0rE 274 78.94 c.41.1.1 96735 2z6iA 332 79.16 3cg0A 140 79.49 2hx1A 284 79.93 2hf2A 283 80.20 2yxbA 161 80.41 2fbkA 181 80.71 a.4.5.28 133247 1hslA 238 81.90 c.94.1.1 35804 1yb5A 351 82.42 b.35.1.2,c.2.1.1 116601,116602 3ca8A 266 82.45 3breA 358 82.71 2eggA 297 83.04 2dwuA 276 83.38 1rkd 309 83.72 1khdA 345 83.82 a.46.2.1,c.27.1.1 77400,77401 2ywdA 191 85.70 2hk9A 275 85.94 2aznA 219 85.98 c.71.1.2 127608 1nnlA 225 86.03 c.108.1.4 85906 3broA 141 86.08 2yw2A 424 86.32 1yx1A 264 86.56 c.1.15.7 124169 3bd1A 79 87.08 2yutA 207 87.54 2zdrA 349 87.93 1u7pA 164 88.32 c.108.1.17 113095 2hjvA 163 89.57 1t70A 255 89.79 d.159.1.9 112275