# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 3.50e-27 a.35.1.5,c.93.1.1 66652,66653 2fepA 289 2.83e-22 2iksA 293 3.93e-22 2rgyA 290 5.41e-22 3c3kA 285 5.69e-22 2o20A 332 1.87e-21 3ctpA 330 2.42e-21 1jyeA 349 3.30e-21 c.93.1.1 67455 1dbqA 289 5.58e-21 c.93.1.1 35666 3bblA 287 6.36e-21 3brqA 296 1.01e-20 2ioyA 283 1.28e-20 2driA 271 1.56e-20 c.93.1.1 35637 3cs3A 277 1.57e-20 3bilA 348 2.39e-20 2dri 271 3.28e-20 2qu7A 288 4.88e-20 2fn9A 290 4.92e-20 2fvyA 309 6.82e-20 c.93.1.1 134227 1bykA 255 1.32e-19 c.93.1.1 35706 3d02A 303 2.09e-19 3brsA 289 2.26e-19 1gca 309 3.76e-19 1tjyA 316 4.08e-19 c.93.1.1 107062 1jx6A 342 5.57e-19 c.93.1.1 67406 2h0aA 276 6.12e-19 2qvcA 313 7.34e-19 8abpA 306 8.49e-19 c.93.1.1 35647 2h3hA 313 8.87e-19 2rjoA 332 1.29e-18 3clkA 290 2.06e-18 1gudA 288 2.31e-18 c.93.1.1 83326 8abp 306 9.43e-18 3c6qA 311 4.00e-17 2fqxA 318 6.83e-16 2qh8A 302 3.80e-15 2hqbA 296 3.13e-14 1usgA 346 0.000360 c.93.1.1 99864 1z15A 344 0.000671 3ckmA 327 0.001350 1pea 385 0.002446 1peaA 385 0.005442 c.93.1.1 35662 2h4aA 325 0.03312 1dp4A 435 0.04706 c.93.1.1 35710 1jdpA 441 0.06590 c.93.1.1 62906 2e4uA 555 0.1006 1ewkA 490 0.4255 c.93.1.1 35712 2ehhA 294 1.435 2rfgA 297 1.865 2vlbA 251 2.716 2fp4B 395 3.306 c.23.4.1,d.142.1.4 133897,133898 2hmcA 344 4.283 2dgdA 223 4.335 2r91A 286 4.780 1rvgA 305 6.715 c.1.10.2 97920 1xkyA 301 7.887 c.1.10.1 122094 1oywA 523 8.747 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2v9dA 343 9.438 2ojpA 292 9.542 2c4wA 176 10.22 1o5kA 306 11.59 c.1.10.1 92504 1gkpA 458 12.24 b.92.1.3,c.1.9.6 70231,70232 1zxxA 319 12.78 2purA 292 12.90 1y7pA 223 13.09 c.23.1.7,d.58.18.12 122708,122709 2ebyA 113 13.26 2hk0A 309 14.02 2nu8B 388 14.90 1w3iA 293 15.68 c.1.10.1 109152 2ffiA 288 16.24 c.1.9.15 133385 2r8wA 332 17.05 2qt3A 403 17.21 1ir6A 424 17.88 c.107.1.2 71342 1hl2A 297 17.93 c.1.10.1 83581 2fliA 220 18.39 c.1.2.2 133714 1nvmA 345 18.82 a.5.7.1,c.1.10.5 86249,86250 2cw6A 298 19.10 1jflA 228 20.89 c.78.2.1,c.78.2.1 71656,71657 1pwhA 327 21.31 c.79.1.1 95224 1jxhA 288 22.55 c.72.1.2 67415 1u7pA 164 22.80 c.108.1.17 113095 3cyjA 372 22.98 2r79A 283 23.47 2r7aA 256 25.15 1w24A 182 26.79 d.159.1.7 120579 1v71A 323 27.88 c.79.1.1 119859 1lt8A 406 27.90 c.1.26.1 78186 2nuwA 288 27.98 1uqrA 154 28.16 c.23.13.1 99779 1h05A 146 28.41 c.23.13.1 76433 1xi3A 215 28.45 c.1.3.1 109601 1y7yA 74 28.66 a.35.1.3 122729 1p5jA 372 29.72 c.79.1.1 104067 1c4oA 664 30.45 c.37.1.19,c.37.1.19 32415,32416 2b5aA 77 30.97 a.35.1.3 127882 3bwgA 239 31.28 2a22A 215 31.79 d.159.1.7 126025 1lsuA 147 31.95 c.2.1.9 74250 1twiA 434 34.06 b.49.2.3,c.1.6.1 107399,107400 1ta9A 450 34.34 1nnsA 326 34.61 c.88.1.1 85910 1y9qA 192 34.77 a.35.1.8,b.82.1.15 116592,116593 1k77A 260 35.37 c.1.15.5 72096 2dxnA 274 36.04 2ek5A 129 36.59 1hw1A 239 37.55 a.4.5.6,a.78.1.1 16111,18441 2di3A 239 38.48 1yx1A 264 39.59 c.1.15.7 124169 1lst 239 39.95 2bdqA 224 40.71 1kbjA 412 41.33 c.1.4.1 72280 2ia4A 287 42.11 3cecA 104 42.22 1hp1A 516 42.93 d.114.1.1,d.159.1.2 70976,70977 2atsA 292 43.35 c.1.10.1 127306 2oztA 332 43.39 2ictA 94 44.40 1gtzA 156 47.75 c.23.13.1 70539 2uz1A 563 47.79 1utxA 66 48.05 a.35.1.3 108034 1vfsA 386 48.35 b.49.2.2,c.1.6.1 108584,108585 1pl8A 356 48.71 b.35.1.2,c.2.1.1 94878,94879 2ieeA 271 50.36 2pvuA 272 50.56 2qq9A 226 50.63 1twdA 256 51.80 c.1.30.1 107397 2pceA 386 51.94 2pmqA 377 52.10 1hlvA 131 52.22 a.4.1.7,a.4.1.7 65854,65855 1nu5A 370 52.36 c.1.11.2,d.54.1.1 92183,92184 3by6A 126 53.33 1zu0A 529 54.17 3bs3A 76 54.24 2au3A 407 57.08 1tcvA 287 57.15 1b0nA 111 57.27 a.34.1.1,a.35.1.3 17001,17064 2obxA 157 57.30 2pcqA 283 57.76 1s8nA 205 58.63 c.23.1.1 105374 2pr7A 137 59.36 2qzjA 136 60.31 2q88A 257 61.00 1adrA 76 61.12 a.35.1.2 17042 2bnmA 198 61.68 a.35.1.3,b.82.1.10 128835,128836 1o7jA 327 62.76 c.88.1.1 81140 1u0sY 118 62.85 c.23.1.1 107566 1wkyA 464 63.62 b.18.1.31,c.1.8.3 120992,120993 1fx7A 230 63.98 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1z91A 147 64.35 a.4.5.28 124736 1f74A 293 64.55 c.1.10.1 29079 2pgfA 371 64.72 4pgaA 337 66.03 c.88.1.1 35565 1dpeA 507 66.35 c.94.1.1 35799 2r1jL 68 67.19 2q5cA 196 67.80 2v1xA 591 68.08 2gokA 429 68.42 1yb5A 351 68.89 b.35.1.2,c.2.1.1 116601,116602 2pexA 153 69.48 2d13A 227 69.90 c.26.2.1 131121 2o6lA 170 70.88 1zh2A 121 71.16 c.23.1.1 125069 1d2mA 665 72.06 c.37.1.19,c.37.1.19 32417,32418 1pii 452 72.07 3d0cA 314 72.77 1fyeA 229 72.79 c.23.16.4 31477 2o7iA 592 72.86 1te2A 226 72.97 c.108.1.6 106792 1y81A 138 73.44 c.2.1.8 122731 3broA 141 74.02 1vr5A 547 75.20 c.94.1.1 120437 2pkeA 251 75.45 1w8sA 263 75.54 c.1.10.1 120744 1zgzA 122 75.58 c.23.1.1 125065 3b7hA 78 76.84 3cg0A 140 76.97 1zlqA 502 77.96 c.94.1.1 125253 1zjjA 263 77.96 1ru8A 232 78.41 c.26.2.1 97849 2hmvA 144 79.27 c.2.1.9 136615 2jfgA 445 79.31 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2z5lA 511 79.37 2abqA 306 81.39 c.72.1.1 126528 2bsxA 253 82.17 c.56.2.1 129128 2nwhA 317 84.10 1r69A 69 84.37 a.35.1.2 17028 1dqsA 393 85.31 e.22.1.1 43347 1b0aA 288 87.07 c.2.1.7,c.58.1.2 30286,33934 1qopA 268 87.71 c.1.2.4 28570 3cmgA 667 87.74 2i0fA 157 88.21 1hqkA 154 89.43 c.16.1.1 65902 2o1mA 258 89.95