# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 4.05e-20 a.35.1.5,c.93.1.1 66652,66653 2fepA 289 9.21e-17 3c3kA 285 1.79e-16 2rgyA 290 1.84e-16 2iksA 293 1.88e-16 1jyeA 349 3.96e-16 c.93.1.1 67455 1dbqA 289 4.09e-16 c.93.1.1 35666 2o20A 332 5.70e-16 3bblA 287 5.95e-16 3ctpA 330 1.24e-15 3brqA 296 2.03e-15 2ioyA 283 2.37e-15 3cs3A 277 2.80e-15 2driA 271 3.20e-15 c.93.1.1 35637 3bilA 348 3.97e-15 2dri 271 5.20e-15 2fn9A 290 6.85e-15 3brsA 289 8.17e-15 2qu7A 288 8.34e-15 1tjyA 316 1.02e-14 c.93.1.1 107062 1bykA 255 1.59e-14 c.93.1.1 35706 3d02A 303 2.34e-14 1gca 309 2.68e-14 1jx6A 342 3.34e-14 c.93.1.1 67406 2qvcA 313 3.39e-14 2h3hA 313 3.49e-14 2fvyA 309 4.07e-14 c.93.1.1 134227 2h0aA 276 4.13e-14 2rjoA 332 7.48e-14 3clkA 290 1.05e-13 1gudA 288 1.15e-13 c.93.1.1 83326 8abpA 306 1.17e-13 c.93.1.1 35647 3c6qA 311 4.72e-13 8abp 306 5.98e-13 2fqxA 318 4.31e-12 2qh8A 302 3.14e-11 2hqbA 296 1.01e-10 1usgA 346 0.007613 c.93.1.1 99864 1z15A 344 0.01015 1pea 385 0.01455 3ckmA 327 0.01914 1peaA 385 0.02100 c.93.1.1 35662 1dp4A 435 0.2613 c.93.1.1 35710 1jdpA 441 0.3258 c.93.1.1 62906 1ewkA 490 0.9226 c.93.1.1 35712 2h4aA 325 1.013 2e4uA 555 1.442 2vlbA 251 3.667 2ehhA 294 5.336 2rfgA 297 8.244 2hmcA 344 8.327 2r91A 286 11.24 2dgdA 223 12.50 2fp4B 395 13.38 c.23.4.1,d.142.1.4 133897,133898 2fliA 220 14.19 c.1.2.2 133714 2r8wA 332 14.40 1rvgA 305 15.57 c.1.10.2 97920 2bsxA 253 16.27 c.56.2.1 129128 2hk0A 309 16.96 2v9dA 343 17.72 1o5kA 306 18.60 c.1.10.1 92504 1zxxA 319 18.84 1v71A 323 20.06 c.79.1.1 119859 1sr9A 644 20.12 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1p5jA 372 21.34 c.79.1.1 104067 2c4wA 176 22.67 2ffiA 288 23.23 c.1.9.15 133385 1y7pA 223 26.11 c.23.1.7,d.58.18.12 122708,122709 2ez9A 603 26.37 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1qh8A 478 26.86 c.92.2.3 35633 1xi3A 215 27.33 c.1.3.1 109601 1w3iA 293 30.37 c.1.10.1 109152 1sw5B 275 30.70 c.94.1.1 106070 1pwhA 327 31.18 c.79.1.1 95224 2c07A 285 32.86 c.2.1.2 129577 1twiA 434 33.22 b.49.2.3,c.1.6.1 107399,107400 1duvG 333 33.63 c.78.1.1,c.78.1.1 35228,35229 1v7cA 351 35.05 c.79.1.1 100446 2ieeA 271 35.83 1hl2A 297 36.70 c.1.10.1 83581 2bdqA 224 37.06 2nu8B 388 37.23 1uqrA 154 38.84 c.23.13.1 99779 1jflA 228 38.97 c.78.2.1,c.78.2.1 71656,71657 3bk2A 562 41.05 2o1mA 258 41.91 2nloA 302 42.27 1f74A 293 42.98 c.1.10.1 29079 1lsuA 147 43.82 c.2.1.9 74250 1yx1A 264 44.53 c.1.15.7 124169 1h05A 146 45.22 c.23.13.1 76433 2v1xA 591 46.38 1lt8A 406 46.80 c.1.26.1 78186 2i6uA 307 46.89 1nvmA 345 47.91 a.5.7.1,c.1.10.5 86249,86250 1c4oA 664 48.48 c.37.1.19,c.37.1.19 32415,32416 1vi2A 300 49.13 c.2.1.7,c.58.1.5 100726,100727 1ydyA 356 50.80 c.1.18.3 123006 1jxhA 288 52.97 c.72.1.2 67415 1ur4A 399 53.14 c.1.8.3 113402 1ml4A 308 53.56 c.78.1.1,c.78.1.1 79255,79256 2v3gA 283 53.81 1b0aA 288 53.85 c.2.1.7,c.58.1.2 30286,33934 1mv8A 436 55.50 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1u7pA 164 56.02 c.108.1.17 113095 1rj9A 304 57.26 a.24.13.1,c.37.1.10 97553,97554 1gkpA 458 57.41 b.92.1.3,c.1.9.6 70231,70232 1k77A 260 58.53 c.1.15.5 72096 2purA 292 58.58 1nu5A 370 59.93 c.1.11.2,d.54.1.1 92183,92184 1fyeA 229 60.15 c.23.16.4 31477 2axqA 467 62.11 3d0cA 314 62.66 2ovlA 371 62.97 1gtzA 156 63.99 c.23.13.1 70539 2abqA 306 66.44 c.72.1.1 126528 2ebyA 113 66.65 1xrtA 467 67.06 b.92.1.3,c.1.9.6 122258,122259 2ftwA 521 67.22 b.92.1.3,c.1.9.6 134083,134084 1xuuA 349 67.27 b.85.1.1,c.1.10.6 116067,116068 1w8sA 263 67.97 c.1.10.1 120744 1w24A 182 69.61 d.159.1.7 120579 7a3hA 303 69.80 c.1.8.3 28817 2gptA 523 71.64 2a22A 215 71.81 d.159.1.7 126025 1vzwA 244 73.42 c.1.2.1 120553 1vfsA 386 74.18 b.49.2.2,c.1.6.1 108584,108585 1jr2A 286 76.15 c.113.1.1 67111 2q5cA 196 79.22 2nuwA 288 79.88 1tcvA 287 79.96 2ia4A 287 80.38 1xkyA 301 81.29 c.1.10.1 122094 1qopA 268 81.34 c.1.2.4 28570 1jysA 242 81.63 c.56.2.1 77216 1fmcA 255 82.17 c.2.1.2 29856 2eq5A 228 82.42 1geeA 261 82.74 c.2.1.2 90509 1q7zA 566 82.88 c.1.21.2,c.1.26.1 96090,96091 1wcwA 261 83.43 3cyjA 372 83.45 2nxwA 565 85.06 2ph3A 245 85.20 2hmvA 144 86.08 c.2.1.9 136615 1mkyA 439 86.25 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1phpA 394 87.03 c.86.1.1 35452 2ozzA 231 87.40 2qzjA 136 87.50 2a0nA 265 88.00 c.1.2.1 125961 1n8kA 374 88.45 b.35.1.2,c.2.1.1 80298,80299 2r79A 283 88.94 2qahA 303 88.98 2qdeA 397 89.01 3csuA 310 89.91 c.78.1.1,c.78.1.1 35094,35095 2qgyA 391 89.95