# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 2.16e-26 a.35.1.5,c.93.1.1 66652,66653 2fepA 289 6.48e-22 2iksA 293 1.03e-21 2rgyA 290 1.46e-21 3c3kA 285 2.19e-21 2o20A 332 5.55e-21 3ctpA 330 8.01e-21 1jyeA 349 9.53e-21 c.93.1.1 67455 1dbqA 289 1.32e-20 c.93.1.1 35666 3bblA 287 1.65e-20 3brqA 296 2.32e-20 2ioyA 283 3.36e-20 2driA 271 4.00e-20 c.93.1.1 35637 3cs3A 277 6.61e-20 2dri 271 6.93e-20 3bilA 348 7.30e-20 2qu7A 288 1.03e-19 2fn9A 290 1.15e-19 2fvyA 309 1.52e-19 c.93.1.1 134227 1bykA 255 3.25e-19 c.93.1.1 35706 3brsA 289 5.80e-19 3d02A 303 8.12e-19 1gca 309 8.58e-19 1tjyA 316 9.92e-19 c.93.1.1 107062 2qvcA 313 1.21e-18 2h0aA 276 1.40e-18 2h3hA 313 1.44e-18 1jx6A 342 1.63e-18 c.93.1.1 67406 8abpA 306 2.14e-18 c.93.1.1 35647 2rjoA 332 2.57e-18 1gudA 288 4.21e-18 c.93.1.1 83326 3clkA 290 4.59e-18 8abp 306 2.09e-17 3c6qA 311 5.56e-17 2fqxA 318 1.48e-15 2qh8A 302 6.33e-15 2hqbA 296 3.58e-14 1usgA 346 0.000326 c.93.1.1 99864 1z15A 344 0.000586 3ckmA 327 0.001066 1pea 385 0.002806 1peaA 385 0.01124 c.93.1.1 35662 2h4aA 325 0.03363 1dp4A 435 0.03977 c.93.1.1 35710 1jdpA 441 0.09038 c.93.1.1 62906 2e4uA 555 0.1028 1ewkA 490 0.6613 c.93.1.1 35712 2ehhA 294 1.355 2vlbA 251 1.628 2rfgA 297 2.254 2hmcA 344 3.461 2dgdA 223 3.546 2fp4B 395 3.983 c.23.4.1,d.142.1.4 133897,133898 2r91A 286 4.006 1rvgA 305 5.823 c.1.10.2 97920 2ojpA 292 6.909 1oywA 523 6.980 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2c4wA 176 8.086 1xkyA 301 8.642 c.1.10.1 122094 1ir6A 424 8.834 c.107.1.2 71342 2v9dA 343 8.836 1y7pA 223 9.407 c.23.1.7,d.58.18.12 122708,122709 2purA 292 10.78 2nu8B 388 11.74 2hk0A 309 12.10 2r8wA 332 13.13 1o5kA 306 13.38 c.1.10.1 92504 1gkpA 458 13.82 b.92.1.3,c.1.9.6 70231,70232 2ffiA 288 16.61 c.1.9.15 133385 1w3iA 293 16.98 c.1.10.1 109152 1pwhA 327 17.06 c.79.1.1 95224 2fliA 220 17.77 c.1.2.2 133714 1h05A 146 17.86 c.23.13.1 76433 2cw6A 298 18.30 1uqrA 154 18.84 c.23.13.1 99779 2qt3A 403 19.49 1p5jA 372 19.58 c.79.1.1 104067 2ebyA 113 20.77 2nuwA 288 21.55 1u7pA 164 23.42 c.108.1.17 113095 1zxxA 319 23.94 1lt8A 406 24.44 c.1.26.1 78186 1xi3A 215 25.20 c.1.3.1 109601 3cyjA 372 25.53 1hl2A 297 25.90 c.1.10.1 83581 1nvmA 345 26.95 a.5.7.1,c.1.10.5 86249,86250 1jxhA 288 27.50 c.72.1.2 67415 1twiA 434 27.79 b.49.2.3,c.1.6.1 107399,107400 2r7aA 256 27.88 1nnsA 326 28.13 c.88.1.1 85910 3bk2A 562 28.50 1w24A 182 31.60 d.159.1.7 120579 1gtzA 156 32.41 c.23.13.1 70539 2dxnA 274 32.81 1c4oA 664 33.02 c.37.1.19,c.37.1.19 32415,32416 2r79A 283 33.75 1ta9A 450 34.49 1lsuA 147 34.87 c.2.1.9 74250 1v71A 323 35.04 c.79.1.1 119859 1jflA 228 35.08 c.78.2.1,c.78.2.1 71656,71657 1yx1A 264 36.43 c.1.15.7 124169 1kbjA 412 36.87 c.1.4.1 72280 1vfsA 386 38.07 b.49.2.2,c.1.6.1 108584,108585 3bwgA 239 38.33 2bdqA 224 38.55 2a22A 215 39.03 d.159.1.7 126025 2pmqA 377 39.30 2oztA 332 40.92 1hp1A 516 40.95 d.114.1.1,d.159.1.2 70976,70977 1k77A 260 41.78 c.1.15.5 72096 2atsA 292 41.92 c.1.10.1 127306 2b5aA 77 42.19 a.35.1.3 127882 1y9qA 192 42.78 a.35.1.8,b.82.1.15 116592,116593 1y7yA 74 42.93 a.35.1.3 122729 1fyeA 229 43.39 c.23.16.4 31477 2ek5A 129 44.07 1nu5A 370 45.28 c.1.11.2,d.54.1.1 92183,92184 1tcvA 287 45.82 1mkyA 439 48.14 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1pl8A 356 49.78 b.35.1.2,c.2.1.1 94878,94879 1f74A 293 50.41 c.1.10.1 29079 2gokA 429 50.61 2qzjA 136 50.91 2pceA 386 50.97 1w8sA 263 50.98 c.1.10.1 120744 2db3A 434 51.64 1u0sY 118 52.19 c.23.1.1 107566 1hw1A 239 52.24 a.4.5.6,a.78.1.1 16111,18441 2hmvA 144 52.64 c.2.1.9 136615 1twdA 256 53.50 c.1.30.1 107397 2v1xA 591 53.82 1o7jA 327 54.56 c.88.1.1 81140 2di3A 239 55.01 2uz1A 563 55.47 2q5cA 196 55.57 3cecA 104 56.29 3cg0A 140 57.30 1pii 452 58.14 1qh8A 478 58.26 c.92.2.3 35633 2qq9A 226 59.57 1yb5A 351 59.67 b.35.1.2,c.2.1.1 116601,116602 2ictA 94 60.48 2bv6A 142 60.68 1s8nA 205 61.05 c.23.1.1 105374 1utxA 66 62.65 a.35.1.3 108034 4pgaA 337 63.03 c.88.1.1 35565 1z91A 147 63.46 a.4.5.28 124736 1o4vA 183 63.62 c.23.8.1 86628 1dpeA 507 64.19 c.94.1.1 35799 1zh2A 121 64.20 c.23.1.1 125069 1lst 239 64.48 2pr7A 137 64.71 2o6lA 170 65.15 2pvuA 272 65.21 2eq5A 228 65.25 2pcqA 283 65.88 1hlvA 131 66.15 a.4.1.7,a.4.1.7 65854,65855 2qgyA 391 66.93 2ahdA 165 67.38 d.159.1.7 126752 2obxA 157 67.55 2ieeA 271 67.89 3by6A 126 68.06 2ovlA 371 69.20 2a0nA 265 69.71 c.1.2.1 125961 2zayA 147 69.82 1tv8A 340 70.29 c.1.28.3 107352 3cmgA 667 72.04 1h1yA 228 72.14 c.1.2.2 76506 2bsxA 253 73.13 c.56.2.1 129128 2bnmA 198 73.28 a.35.1.3,b.82.1.10 128835,128836 3d0cA 314 73.34 1fx7A 230 73.48 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1zu0A 529 73.67 2ia4A 287 73.81 1u11A 182 73.97 c.23.8.1 107576 3bs3A 76 74.24 1wd7A 261 74.51 c.113.1.1 114526 1adrA 76 75.40 a.35.1.2 17042 1xhfA 123 75.94 c.23.1.1 122003 2v7pA 310 76.08 1b0nA 111 76.78 a.34.1.1,a.35.1.3 17001,17064 1ml4A 308 77.10 c.78.1.1,c.78.1.1 79255,79256 1m1nA 491 77.22 c.92.2.3 78417 2pkeA 251 79.46 1zgzA 122 80.22 c.23.1.1 125065 2nwhA 317 81.98 1duvG 333 82.19 c.78.1.1,c.78.1.1 35228,35229 1b0aA 288 82.22 c.2.1.7,c.58.1.2 30286,33934 1dqsA 393 83.04 e.22.1.1 43347 1to2E 281 83.37 c.41.1.1 112595 1f2dA 341 83.67 c.79.1.1 35298 1q9uA 130 83.69 d.129.7.1 96314 1f8fA 371 84.06 b.35.1.2,c.2.1.1 83246,83247 2gasA 307 85.25 1wkyA 464 85.63 b.18.1.31,c.1.8.3 120992,120993 1y81A 138 85.90 c.2.1.8 122731 3broA 141 86.04 1vzwA 244 86.79 c.1.2.1 120553 2au3A 407 87.21 2oqrA 230 87.33 2z5lA 511 88.58 2q88A 257 88.72 1m3uA 264 89.45 c.1.12.8 84784