# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 1.38e-31 a.35.1.5,c.93.1.1 66652,66653 2iksA 293 9.17e-26 2fepA 289 1.01e-25 2rgyA 290 2.00e-25 3c3kA 285 4.04e-25 2o20A 332 8.34e-25 1dbqA 289 1.47e-24 c.93.1.1 35666 3bblA 287 1.76e-24 1jyeA 349 3.41e-24 c.93.1.1 67455 3ctpA 330 3.54e-24 2ioyA 283 6.23e-24 2driA 271 8.41e-24 c.93.1.1 35637 3brqA 296 1.06e-23 3cs3A 277 1.22e-23 3bilA 348 1.43e-23 2dri 271 1.66e-23 3clkA 290 2.20e-23 2fn9A 290 3.45e-23 2qu7A 288 4.41e-23 2fvyA 309 4.42e-23 c.93.1.1 134227 1jx6A 342 6.72e-23 c.93.1.1 67406 3brsA 289 6.99e-23 3d02A 303 9.14e-23 1gca 309 1.28e-22 2h3hA 313 2.44e-22 2h0aA 276 2.59e-22 2qvcA 313 3.70e-22 1bykA 255 4.24e-22 c.93.1.1 35706 1tjyA 316 4.51e-22 c.93.1.1 107062 8abpA 306 6.07e-22 c.93.1.1 35647 2rjoA 332 6.91e-22 8abp 306 8.16e-21 1gudA 288 1.35e-20 c.93.1.1 83326 3c6qA 311 1.99e-20 2fqxA 318 8.81e-19 2qh8A 302 1.46e-17 2hqbA 296 5.33e-17 1z15A 344 0.000350 1usgA 346 0.000356 c.93.1.1 99864 3ckmA 327 0.000782 1pea 385 0.000836 1peaA 385 0.002557 c.93.1.1 35662 2h4aA 325 0.01779 2e4uA 555 0.05287 1dp4A 435 0.05491 c.93.1.1 35710 1ewkA 490 0.1194 c.93.1.1 35712 1jdpA 441 0.2774 c.93.1.1 62906 2vlbA 251 1.899 2dgdA 223 3.325 2c4wA 176 6.287 1lst 239 8.849 3bk2A 562 9.877 2o1mA 258 10.38 1zxxA 319 10.92 3bwgA 239 11.63 2ebyA 113 12.75 1jflA 228 12.75 c.78.2.1,c.78.2.1 71656,71657 1hlvA 131 14.08 a.4.1.7,a.4.1.7 65854,65855 2bsxA 253 17.48 c.56.2.1 129128 1hw1A 239 19.27 a.4.5.6,a.78.1.1 16111,18441 1w24A 182 19.51 d.159.1.7 120579 1pjcA 361 20.01 c.2.1.4,c.23.12.2 30101,31361 2qq9A 226 20.20 2nu8B 388 20.78 2ieeA 271 20.95 2dxnA 274 21.27 1pwhA 327 21.91 c.79.1.1 95224 1w3iA 293 22.42 c.1.10.1 109152 1sw5B 275 22.82 c.94.1.1 106070 2fp4B 395 23.10 c.23.4.1,d.142.1.4 133897,133898 2ia4A 287 23.48 2r7aA 256 23.75 1tcvA 287 23.96 1zu0A 529 24.23 2nuwA 288 25.95 2ehhA 294 27.48 1wdnA 226 29.07 c.94.1.1 35816 1y7pA 223 30.05 c.23.1.7,d.58.18.12 122708,122709 3cecA 104 30.06 1h05A 146 30.54 c.23.13.1 76433 2ahdA 165 30.85 d.159.1.7 126752 1u7pA 164 31.04 c.108.1.17 113095 1p5jA 372 31.29 c.79.1.1 104067 2z5lA 511 31.38 2a22A 215 31.62 d.159.1.7 126025 1ir6A 424 32.73 c.107.1.2 71342 1uqrA 154 33.02 c.23.13.1 99779 2q88A 257 33.03 2ictA 94 33.73 1xi3A 215 33.94 c.1.3.1 109601 2bv6A 142 34.12 1oheA 348 37.02 c.45.1.1,c.45.1.1 87013,87014 1ys4A 354 37.40 2a5sA 284 37.80 c.94.1.1 126178 2qahA 303 37.85 2pvuA 272 39.44 2ek5A 129 39.77 1n4aA 252 40.00 c.92.2.2 85317 2z6iA 332 40.48 1xt8A 292 40.48 c.94.1.1 122293 1dpeA 507 40.94 c.94.1.1 35799 1z91A 147 41.33 a.4.5.28 124736 1dqsA 393 41.41 e.22.1.1 43347 2r91A 286 41.98 2q7dA 346 43.81 2r79A 283 44.47 2b82A 211 44.50 c.108.1.12 128057 1dnpA 471 44.87 a.99.1.1,c.28.1.1 18775,31630 1zlqA 502 45.42 c.94.1.1 125253 2b5aA 77 46.90 a.35.1.3 127882 3cjnA 162 46.94 1nnsA 326 47.25 c.88.1.1 85910 1o17A 345 47.39 a.46.2.1,c.27.1.1 80765,80766 3broA 141 47.45 3cdhA 155 48.14 2fbkA 181 48.52 a.4.5.28 133247 1hslA 238 49.18 c.94.1.1 35804 1jysA 242 50.29 c.56.2.1 77216 2pexA 153 51.33 2etvA 346 51.49 c.92.2.4 132372 2pajA 492 51.54 2qt3A 403 52.15 2q01A 497 52.45 3boqA 160 52.89 1v7bA 185 54.37 a.4.1.9,a.121.1.1 119861,119862 1je0A 236 54.57 c.56.2.1 66581 2hmcA 344 55.12 1lsuA 147 55.92 c.2.1.9 74250 1m1nA 491 56.10 c.92.2.3 78417 1fx7A 230 56.35 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qs9A 194 56.56 1rlmA 271 57.03 c.108.1.10 111860 1rxyA 253 57.78 c.56.2.1 98065 2au3A 407 57.79 1ml4A 308 57.94 c.78.1.1,c.78.1.1 79255,79256 1yovA 537 59.93 c.111.1.2 123785 2hu5A 582 60.75 b.69.7.2,c.69.1.33 136763,136764 1gtzA 156 61.40 c.23.13.1 70539 2oycA 306 62.68 3bpvA 138 63.80 2di3A 239 64.02 1b8oA 284 64.04 c.56.2.1 33762 2db3A 434 64.28 2c0hA 353 64.48 c.1.8.3 129594 1sr9A 644 65.31 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 2ozzA 231 65.83 1b0aA 288 66.16 c.2.1.7,c.58.1.2 30286,33934 1v7cA 351 66.62 c.79.1.1 100446 1y7yA 74 68.07 a.35.1.3 122729 2ho4A 259 70.20 1hyeA 313 71.13 c.2.1.5,d.162.1.1 61400,61401 4pgaA 337 71.38 c.88.1.1 35565 2fssA 365 71.39 1twiA 434 71.52 b.49.2.3,c.1.6.1 107399,107400 1sur 215 72.13 2ffiA 288 72.22 c.1.9.15 133385 2yrxA 451 72.35 1t5iA 172 72.47 c.37.1.19 106450 1us5A 314 73.02 c.94.1.1 99856 3cmgA 667 73.86 1ru8A 232 76.22 c.26.2.1 97849 2hmvA 144 77.00 c.2.1.9 136615 2gxgA 146 77.82 2nooA 502 78.88 1miwA 404 79.19 a.173.1.1,d.218.1.4 79162,79163 1tezA 474 79.20 a.99.1.1,c.28.1.1 112409,112410 2fliA 220 79.60 c.1.2.2 133714 1uteA 313 80.36 d.159.1.1 42078 2ethA 154 82.02 a.4.5.28 132358 1lnwA 147 83.10 a.4.5.28 78104 1tca 317 83.73 2axqA 467 83.87 3csuA 310 83.92 c.78.1.1,c.78.1.1 35094,35095 2q46A 253 83.97 c.2.1.2 139825 1k0dA 260 84.00 a.45.1.1,c.47.1.5 67930,67931 1t2aA 375 84.44 c.2.1.2 99078 1vkfA 188 84.97 c.1.29.1 108656 2rdpA 150 85.33 2fbiA 142 85.79 a.4.5.28 133246 1zuwA 272 86.01 1lj9A 144 86.27 a.4.5.28 78035 2pw6A 271 86.32 2bdqA 224 86.59 1sw2A 275 86.66 c.94.1.1 106064 3bjaA 139 88.11 1lstA 239 88.14 c.94.1.1 35755 3bs3A 76 88.94 2cw6A 298 89.37 1ydyA 356 89.48 c.1.18.3 123006