# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 1.69e-28 a.35.1.5,c.93.1.1 66652,66653 2fepA 289 1.82e-23 2iksA 293 2.93e-23 2rgyA 290 4.50e-23 3c3kA 285 7.27e-23 2o20A 332 1.01e-22 3ctpA 330 2.23e-22 3bblA 287 2.51e-22 1dbqA 289 2.58e-22 c.93.1.1 35666 1jyeA 349 6.03e-22 c.93.1.1 67455 2ioyA 283 7.38e-22 3cs3A 277 8.23e-22 3brqA 296 9.30e-22 2driA 271 1.10e-21 c.93.1.1 35637 2dri 271 1.82e-21 3bilA 348 2.88e-21 3clkA 290 2.99e-21 2fn9A 290 4.39e-21 2qu7A 288 4.54e-21 2fvyA 309 5.73e-21 c.93.1.1 134227 1jx6A 342 7.91e-21 c.93.1.1 67406 3brsA 289 1.28e-20 3d02A 303 1.49e-20 2h3hA 313 1.73e-20 1gca 309 1.96e-20 1bykA 255 2.03e-20 c.93.1.1 35706 2qvcA 313 2.04e-20 1tjyA 316 3.54e-20 c.93.1.1 107062 2h0aA 276 4.63e-20 8abpA 306 6.94e-20 c.93.1.1 35647 2rjoA 332 1.13e-19 8abp 306 4.95e-19 1gudA 288 8.87e-19 c.93.1.1 83326 3c6qA 311 1.13e-18 2fqxA 318 6.01e-17 2qh8A 302 4.02e-16 2hqbA 296 1.22e-15 1usgA 346 0.000250 c.93.1.1 99864 1z15A 344 0.000431 1pea 385 0.000647 3ckmA 327 0.001233 1peaA 385 0.002970 c.93.1.1 35662 2h4aA 325 0.01962 2e4uA 555 0.05686 1dp4A 435 0.06805 c.93.1.1 35710 1jdpA 441 0.1389 c.93.1.1 62906 1ewkA 490 0.1675 c.93.1.1 35712 2vlbA 251 3.315 2dgdA 223 4.687 2c4wA 176 5.416 1zxxA 319 8.945 2fp4B 395 9.347 c.23.4.1,d.142.1.4 133897,133898 2nu8B 388 9.99 2ehhA 294 10.42 1y7pA 223 10.95 c.23.1.7,d.58.18.12 122708,122709 3bk2A 562 11.55 2ebyA 113 12.19 1pwhA 327 12.74 c.79.1.1 95224 1ir6A 424 13.47 c.107.1.2 71342 2hmcA 344 14.63 1jflA 228 15.57 c.78.2.1,c.78.2.1 71656,71657 2qt3A 403 15.78 2r91A 286 16.48 1uqrA 154 17.10 c.23.13.1 99779 2rfgA 297 17.16 1u7pA 164 17.23 c.108.1.17 113095 1p5jA 372 19.23 c.79.1.1 104067 2dxnA 274 21.20 2r7aA 256 21.56 1hlvA 131 21.73 a.4.1.7,a.4.1.7 65854,65855 1hw1A 239 23.11 a.4.5.6,a.78.1.1 16111,18441 2ia4A 287 24.87 1twiA 434 24.89 b.49.2.3,c.1.6.1 107399,107400 1lst 239 26.08 2ictA 94 26.41 1n4aA 252 26.43 c.92.2.2 85317 1oywA 523 26.52 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1w3iA 293 26.78 c.1.10.1 109152 2b5aA 77 27.88 a.35.1.3 127882 1lt8A 406 28.40 c.1.26.1 78186 3bwgA 239 28.52 2fliA 220 29.20 c.1.2.2 133714 1lsuA 147 30.45 c.2.1.9 74250 1zu0A 529 30.88 2v03A 303 31.82 1z91A 147 32.02 a.4.5.28 124736 2a22A 215 32.17 d.159.1.7 126025 1jysA 242 32.32 c.56.2.1 77216 2pajA 492 33.19 1o17A 345 33.59 a.46.2.1,c.27.1.1 80765,80766 1b0aA 288 34.16 c.2.1.7,c.58.1.2 30286,33934 1y7yA 74 34.54 a.35.1.3 122729 1gtzA 156 34.75 c.23.13.1 70539 1fx7A 230 34.97 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2nuwA 288 35.53 1tcvA 287 35.56 1h05A 146 35.90 c.23.13.1 76433 1xi3A 215 36.24 c.1.3.1 109601 2ek5A 129 37.09 1dqsA 393 37.45 e.22.1.1 43347 3cecA 104 37.70 2ffiA 288 38.21 c.1.9.15 133385 2ahdA 165 38.74 d.159.1.7 126752 2v1xA 591 40.29 1rvgA 305 41.09 c.1.10.2 97920 2ieeA 271 41.29 1sw5B 275 41.36 c.94.1.1 106070 1zlqA 502 42.50 c.94.1.1 125253 2pexA 153 42.58 1y9qA 192 42.83 a.35.1.8,b.82.1.15 116592,116593 1nnsA 326 42.97 c.88.1.1 85910 1wd7A 261 44.76 c.113.1.1 114526 2hk0A 309 45.72 1vfsA 386 46.84 b.49.2.2,c.1.6.1 108584,108585 1hp1A 516 47.23 d.114.1.1,d.159.1.2 70976,70977 1qh8A 478 47.29 c.92.2.3 35633 2pvuA 272 47.64 2bsxA 253 47.89 c.56.2.1 129128 1m1nA 491 48.06 c.92.2.3 78417 2r79A 283 48.41 2au3A 407 48.42 2bv6A 142 49.41 1wkvA 389 49.73 c.79.1.1 120989 1ta9A 450 50.37 2ojpA 292 50.41 2gokA 429 50.88 2r8wA 332 50.91 3broA 141 52.82 1wdnA 226 52.83 c.94.1.1 35816 2z6iA 332 53.02 1w24A 182 53.67 d.159.1.7 120579 2qq9A 226 53.72 1ru8A 232 54.25 c.26.2.1 97849 3cjnA 162 54.54 2f6kA 307 55.35 c.1.9.15 133047 2hmvA 144 55.36 c.2.1.9 136615 2purA 292 55.71 2pz0A 252 55.93 2z5lA 511 56.38 2ho4A 259 57.12 2di3A 239 59.18 2jfgA 445 59.50 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2bdqA 224 60.17 1wcwA 261 60.56 1b0nA 111 60.91 a.34.1.1,a.35.1.3 17001,17064 2q01A 497 61.52 1adrA 76 61.80 a.35.1.2 17042 1dpeA 507 62.06 c.94.1.1 35799 1gpmA 525 62.62 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1s8nA 205 63.58 c.23.1.1 105374 2gdqA 382 64.82 c.1.11.2,d.54.1.1 135020,135021 1v7cA 351 69.15 c.79.1.1 100446 2o7iA 592 69.30 2hbvA 334 69.93 c.1.9.15 136320 2q88A 257 70.55 1c4oA 664 71.28 c.37.1.19,c.37.1.19 32415,32416 2cw6A 298 72.36 1utxA 66 72.81 a.35.1.3 108034 3bs3A 76 73.48 1pjcA 361 74.02 c.2.1.4,c.23.12.2 30101,31361 4pgaA 337 74.04 c.88.1.1 35565 1on2A 142 75.43 a.4.5.24,a.76.1.1 87103,87104 3cdhA 155 75.82 1v71A 323 76.17 c.79.1.1 119859 1v7bA 185 79.03 a.4.1.9,a.121.1.1 119861,119862 1o7jA 327 79.93 c.88.1.1 81140 2bnmA 198 80.77 a.35.1.3,b.82.1.10 128835,128836 1zh2A 121 81.26 c.23.1.1 125069 1mkyA 439 81.30 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1t5iA 172 81.48 c.37.1.19 106450 2nwhA 317 82.22 1ml4A 308 82.44 c.78.1.1,c.78.1.1 79255,79256 3ch0A 272 82.71 1f8fA 371 85.25 b.35.1.2,c.2.1.1 83246,83247 2d1hA 109 85.92 a.4.5.50 131125 1tcaA 317 86.32 c.69.1.17 34726 2d73A 738 86.41 1oheA 348 86.72 c.45.1.1,c.45.1.1 87013,87014 2qeeA 437 87.03 1dnpA 471 88.27 a.99.1.1,c.28.1.1 18775,31630 2oqrA 230 88.80 2rdpA 150 88.92 1ispA 181 88.95 c.69.1.18 76778 2b82A 211 89.61 c.108.1.12 128057