# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 9.09e-32 a.35.1.5,c.93.1.1 66652,66653 2iksA 293 9.80e-26 2fepA 289 1.52e-25 2rgyA 290 2.57e-25 2o20A 332 6.33e-25 3c3kA 285 1.21e-24 3ctpA 330 4.76e-24 2ioyA 283 5.67e-24 1jyeA 349 5.73e-24 c.93.1.1 67455 3brqA 296 5.84e-24 1dbqA 289 5.86e-24 c.93.1.1 35666 3bblA 287 5.88e-24 3cs3A 277 7.24e-24 2dri 271 8.09e-24 2driA 271 1.17e-23 c.93.1.1 35637 2fn9A 290 2.10e-23 3bilA 348 3.19e-23 3brsA 289 5.40e-23 2qu7A 288 5.55e-23 3d02A 303 7.39e-23 3clkA 290 8.78e-23 2fvyA 309 1.36e-22 c.93.1.1 134227 2h3hA 313 1.55e-22 1jx6A 342 2.15e-22 c.93.1.1 67406 8abpA 306 3.26e-22 c.93.1.1 35647 1gca 309 3.40e-22 2qvcA 313 5.71e-22 2h0aA 276 5.75e-22 1tjyA 316 9.64e-22 c.93.1.1 107062 8abp 306 2.73e-21 3c6qA 311 3.63e-21 1bykA 255 4.74e-21 c.93.1.1 35706 1gudA 288 1.01e-20 c.93.1.1 83326 2rjoA 332 2.56e-20 2fqxA 318 5.49e-19 2qh8A 302 3.39e-17 2hqbA 296 4.02e-17 1z15A 344 7.91e-05 1usgA 346 9.71e-05 c.93.1.1 99864 3ckmA 327 0.000113 1peaA 385 0.000279 c.93.1.1 35662 1pea 385 0.000950 2h4aA 325 0.006300 1jdpA 441 0.02065 c.93.1.1 62906 2e4uA 555 0.03017 1dp4A 435 0.03799 c.93.1.1 35710 2vlbA 251 0.04934 1ewkA 490 0.07283 c.93.1.1 35712 2dgdA 223 0.4605 2ehhA 294 1.094 2hmcA 344 1.322 2rfgA 297 2.142 2nloA 302 7.284 1gtzA 156 11.11 c.23.13.1 70539 1k1xA 659 11.89 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2pz0A 252 12.16 2z1aA 552 12.36 1qh8A 478 13.32 c.92.2.3 35633 2ojpA 292 13.80 1o5kA 306 13.96 c.1.10.1 92504 2qt3A 403 14.21 1pwhA 327 15.75 c.79.1.1 95224 1dqsA 393 16.35 e.22.1.1 43347 2dxnA 274 16.46 1nytA 271 17.55 c.2.1.7,c.58.1.5 86417,86418 1vliA 385 18.53 b.85.1.1,c.1.10.6 108830,108831 1e8cA 498 19.32 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2c4wA 176 19.54 1m1nA 491 19.91 c.92.2.3 78417 1uqrA 154 19.94 c.23.13.1 99779 1lt8A 406 20.30 c.1.26.1 78186 2r91A 286 21.39 1t70A 255 22.06 d.159.1.9 112275 1tibA 269 23.22 c.69.1.17 34738 1w3iA 293 23.27 c.1.10.1 109152 2nu8B 388 23.35 1p5jA 372 23.39 c.79.1.1 104067 2eggA 297 24.14 2bsxA 253 24.27 c.56.2.1 129128 1vi2A 300 24.47 c.2.1.7,c.58.1.5 100726,100727 2oryA 346 25.24 1o7jA 327 25.55 c.88.1.1 81140 2a0mA 316 25.64 c.42.1.1 125960 2v9dA 343 26.00 2purA 292 26.09 1nnsA 326 26.56 c.88.1.1 85910 2jfnA 285 26.82 3tglA 269 27.14 c.69.1.17 34733 2dqsA 995 27.90 1sg6A 393 28.39 e.22.1.1 105522 2ffiA 288 28.48 c.1.9.15 133385 2ebyA 113 29.17 1wd7A 261 29.96 c.113.1.1 114526 2hcrA 326 30.73 1cexA 214 31.85 c.69.1.30 31285 2eq5A 228 32.02 1h05A 146 33.31 c.23.13.1 76433 1ycdA 243 33.95 1v71A 323 34.13 c.79.1.1 119859 2ywdA 191 35.50 1wohA 305 35.72 c.42.1.1 109446 1p1mA 406 36.04 b.92.1.4,c.1.9.9 87696,87697 2ia4A 287 36.13 1ta9A 450 36.89 1vljA 407 37.70 e.22.1.2 108832 3cecA 104 39.74 1je0A 236 40.49 c.56.2.1 66581 2fliA 220 40.70 c.1.2.2 133714 1t5iA 172 40.72 c.37.1.19 106450 1h5yA 253 40.83 c.1.2.1 65638 2v3aA 384 42.39 2pw6A 271 43.53 2fv7A 331 44.59 c.72.1.1 134197 1trbA 320 45.54 c.3.1.5,c.3.1.5 30529,30530 1trb 320 45.98 1lhpA 312 46.06 c.72.1.5 77960 1wpgA 994 46.08 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 1khdA 345 46.88 a.46.2.1,c.27.1.1 77400,77401 2cygA 312 48.31 c.1.8.3 131025 2ek5A 129 49.31 1vzwA 244 50.02 c.1.2.1 120553 3bk2A 562 53.05 1zuwA 272 53.11 1t3iA 420 53.12 c.67.1.3 106354 2jfuA 291 54.02 2hk9A 275 55.16 4pgaA 337 55.28 c.88.1.1 35565 1zhaA 267 55.93 2b5aA 77 56.66 a.35.1.3 127882 1b74A 254 56.92 c.78.2.1,c.78.2.1 35264,35265 1hl2A 297 56.99 c.1.10.1 83581 2pvuA 272 57.00 1zl0A 311 57.46 c.8.10.1,c.23.16.7 125231,125232 2a0nA 265 58.05 c.1.2.1 125961 2z5lA 511 59.13 1y7yA 74 59.32 a.35.1.3 122729 2o6lA 170 59.35 3ch0A 272 61.40 1f2dA 341 61.74 c.79.1.1 35298 1vquA 374 62.71 3cjpA 272 62.75 2f7kA 327 63.28 2gn0A 342 63.47 1twiA 434 64.54 b.49.2.3,c.1.6.1 107399,107400 2nwhA 317 64.82 2himA 358 65.58 1ohlA 342 65.68 c.1.10.3 87035 2ictA 94 66.11 1fjhA 257 66.31 c.2.1.2 29870 2higA 487 66.91 2hx1A 284 67.14 1sur 215 67.62 1rkd 309 68.04 1xhcA 367 68.63 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1o17A 345 68.87 a.46.2.1,c.27.1.1 80765,80766 2fssA 365 70.10 1hp1A 516 70.20 d.114.1.1,d.159.1.2 70976,70977 1us5A 314 70.84 c.94.1.1 99856 1l7aA 318 71.36 c.69.1.25 77772 2z6iA 332 71.49 2ho4A 259 71.81 2gruA 368 72.26 1p77A 272 73.58 c.2.1.7,c.58.1.5 94214,94215 1o1yA 239 73.81 c.23.16.1 86554 1wcwA 261 73.87 2ajrA 331 74.45 c.72.1.1 126892 1qh8B 519 74.72 c.92.2.3 35634 2oycA 306 75.88 1h2eA 207 76.05 c.60.1.1 70857 1bvyF 191 76.21 c.23.5.1 31207 1sbyA 254 77.05 c.2.1.2 118930 1rkqA 282 77.33 c.108.1.10 97621 1y81A 138 78.04 c.2.1.8 122731 1bouB 302 78.88 c.56.6.1 33859 2nwrA 267 78.94 1udcA 338 80.01 c.2.1.2 29785 1zosA 230 81.31 2h2wA 312 81.77 3ce9A 354 82.58 1nsjA 205 82.90 c.1.2.4 28560 1rkdA 309 83.48 c.72.1.1 34928 2fr1A 486 84.19 c.2.1.2,c.2.1.2 133961,133962 1n4aA 252 84.42 c.92.2.2 85317 1vhwA 253 84.95 c.56.2.1 100706 2abqA 306 85.23 c.72.1.1 126528 2a5sA 284 85.36 c.94.1.1 126178 1yx1A 264 85.99 c.1.15.7 124169 2nooA 502 86.76 2p0iA 456 87.05 2pmqA 377 87.43 1mucA 373 87.44 c.1.11.2,d.54.1.1 29236,38880 1jf9A 408 88.12 c.67.1.3 62931 1lsuA 147 88.51 c.2.1.9 74250 2r8wA 332 88.52 2atsA 292 88.76 c.1.10.1 127306 1gox 370 89.38 2qpxA 376 89.99