# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 1.76e-27 a.35.1.5,c.93.1.1 66652,66653 2fepA 289 2.45e-22 2iksA 293 2.59e-22 3c3kA 285 6.01e-22 2rgyA 290 7.57e-22 2o20A 332 1.08e-21 1dbqA 289 1.45e-21 c.93.1.1 35666 3ctpA 330 3.61e-21 3brqA 296 4.92e-21 2ioyA 283 5.92e-21 1jyeA 349 1.08e-20 c.93.1.1 67455 3bblA 287 1.42e-20 2driA 271 1.92e-20 c.93.1.1 35637 2dri 271 2.05e-20 2fn9A 290 2.85e-20 3bilA 348 3.17e-20 3cs3A 277 4.12e-20 3clkA 290 4.70e-20 2qu7A 288 5.36e-20 2fvyA 309 6.20e-20 c.93.1.1 134227 2h0aA 276 1.10e-19 1gca 309 1.23e-19 3brsA 289 1.38e-19 3d02A 303 1.93e-19 8abpA 306 2.69e-19 c.93.1.1 35647 2qvcA 313 3.33e-19 2h3hA 313 4.43e-19 1jx6A 342 7.00e-19 c.93.1.1 67406 8abp 306 1.05e-18 1bykA 255 1.14e-18 c.93.1.1 35706 1tjyA 316 1.56e-18 c.93.1.1 107062 2rjoA 332 1.87e-18 1gudA 288 8.15e-18 c.93.1.1 83326 3c6qA 311 1.37e-17 2fqxA 318 3.36e-16 2hqbA 296 2.02e-15 2qh8A 302 2.37e-15 1z15A 344 9.03e-05 1usgA 346 0.000105 c.93.1.1 99864 3ckmA 327 0.000630 1pea 385 0.000955 1peaA 385 0.001770 c.93.1.1 35662 2h4aA 325 0.008148 1dp4A 435 0.01293 c.93.1.1 35710 2e4uA 555 0.07307 2vlbA 251 0.08728 1ewkA 490 0.09697 c.93.1.1 35712 1jdpA 441 0.09866 c.93.1.1 62906 2dgdA 223 0.6342 2hmcA 344 1.267 2ehhA 294 3.228 1wpgA 994 4.605 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 1rlmA 271 6.254 c.108.1.10 111860 2bsxA 253 6.548 c.56.2.1 129128 1jflA 228 6.621 c.78.2.1,c.78.2.1 71656,71657 1us5A 314 6.675 c.94.1.1 99856 2dqsA 995 8.098 1lt8A 406 8.193 c.1.26.1 78186 2c4wA 176 8.303 1ir6A 424 8.793 c.107.1.2 71342 1vi2A 300 9.207 c.2.1.7,c.58.1.5 100726,100727 2jfnA 285 9.247 2rfgA 297 9.940 2ojpA 292 11.17 1zxxA 319 11.21 3bk2A 562 11.26 2nloA 302 12.54 2qt3A 403 13.19 1lst 239 13.20 2purA 292 14.04 2fssA 365 17.22 2z1aA 552 18.37 1zu0A 529 20.74 1e8cA 498 20.95 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1uqrA 154 21.52 c.23.13.1 99779 2cygA 312 23.18 c.1.8.3 131025 1k1xA 659 23.54 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1lsuA 147 23.68 c.2.1.9 74250 1je0A 236 23.75 c.56.2.1 66581 1gtzA 156 24.37 c.23.13.1 70539 2fp4B 395 24.62 c.23.4.1,d.142.1.4 133897,133898 1o5kA 306 25.05 c.1.10.1 92504 1ycdA 243 25.70 1hslA 238 26.64 c.94.1.1 35804 2j6iA 364 26.75 1nnsA 326 27.33 c.88.1.1 85910 1tibA 269 27.50 c.69.1.17 34738 1h05A 146 28.31 c.23.13.1 76433 2q88A 257 28.54 3tglA 269 30.02 c.69.1.17 34733 1nf2A 268 31.45 c.108.1.10 91849 2f48A 555 32.00 c.89.1.1 132915 1ymqA 261 32.93 c.108.1.10 123707 2pz0A 252 33.60 1pwhA 327 34.37 c.79.1.1 95224 4pgaA 337 35.22 c.88.1.1 35565 2r91A 286 36.31 2c1xA 456 36.60 2nwhA 317 36.66 2r7aA 256 37.19 2rbkA 261 38.05 1o7jA 327 39.02 c.88.1.1 81140 1odkA 235 39.07 c.56.2.1 86863 2atsA 292 40.15 c.1.10.1 127306 1jysA 242 40.59 c.56.2.1 77216 2nu8B 388 40.94 2pzmA 330 41.01 2ebyA 113 41.13 2b82A 211 42.08 c.108.1.12 128057 2nuwA 288 42.35 2hf2A 283 42.49 1t70A 255 42.53 d.159.1.9 112275 2v9dA 343 42.97 2jfzA 255 44.92 2chuA 296 45.26 c.92.2.4 130485 1w3iA 293 45.44 c.1.10.1 109152 2i9uA 439 46.33 2dwcA 433 46.73 1b74A 254 48.35 c.78.2.1,c.78.2.1 35264,35265 2d13A 227 49.02 c.26.2.1 131121 2ahdA 165 49.33 d.159.1.7 126752 1kbjA 412 51.96 c.1.4.1 72280 2bllA 345 52.70 c.2.1.2 128733 1sbyA 254 53.35 c.2.1.2 118930 1ml4A 308 53.87 c.78.1.1,c.78.1.1 79255,79256 2je8A 848 54.39 1nytA 271 54.67 c.2.1.7,c.58.1.5 86417,86418 2hy1A 280 56.40 1hp1A 516 56.87 d.114.1.1,d.159.1.2 70976,70977 2a5sA 284 57.33 c.94.1.1 126178 1zosA 230 57.33 2fr1A 486 57.40 c.2.1.2,c.2.1.2 133961,133962 2oryA 346 57.56 1w24A 182 57.72 d.159.1.7 120579 1qh8A 478 58.66 c.92.2.3 35633 1tqhA 247 59.02 c.69.1.29 107225 2ffiA 288 60.09 c.1.9.15 133385 2ia4A 287 60.49 1rkqA 282 61.70 c.108.1.10 97621 1wlsA 328 61.98 1gkpA 458 62.24 b.92.1.3,c.1.9.6 70231,70232 2gasA 307 64.29 1p5jA 372 64.37 c.79.1.1 104067 2eq5A 228 66.39 1nvmA 345 66.42 a.5.7.1,c.1.10.5 86249,86250 1vhwA 253 66.79 c.56.2.1 100706 2hjvA 163 67.27 2axqA 467 67.41 2pq6A 482 67.52 2fnuA 375 69.87 c.67.1.4 133831 2piaA 321 70.87 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1p1mA 406 71.59 b.92.1.4,c.1.9.9 87696,87697 1rloA 271 71.60 c.108.1.10 111864 2r79A 283 73.91 2ac7A 235 75.02 c.56.2.1 126543 1uteA 313 76.18 d.159.1.1 42078 1t5iA 172 77.93 c.37.1.19 106450 1jxhA 288 77.94 c.72.1.2 67415 2gjlA 328 79.13 2eggA 297 79.84 1rhcA 330 80.30 c.1.16.3 97468 1kcxA 518 80.77 b.92.1.3,c.1.9.6 90953,90954 2hmvA 144 80.81 c.2.1.9 136615 1zuwA 272 80.83 1hw1A 239 82.21 a.4.5.6,a.78.1.1 16111,18441 1gpmA 525 82.22 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2fv7A 331 82.59 c.72.1.1 134197 3b4uA 294 82.90 2o0tA 467 83.20 2bdqA 224 83.72 2v3aA 384 84.42 3cecA 104 84.48 2hcrA 326 84.70 2oogA 287 85.98 1qczA 169 86.23 c.23.8.1 31276 1zccA 248 86.39 c.1.18.3 124903 1xkyA 301 86.66 c.1.10.1 122094 1nmoA 247 86.66 c.135.1.1 91980 1i60A 278 87.48 c.1.15.4 71118 1fjhA 257 87.58 c.2.1.2 29870 1y5eA 169 87.62 c.57.1.1 122632 1gdhA 320 88.05 c.2.1.4,c.23.12.1 30095,31355 1o4vA 183 88.31 c.23.8.1 86628 3co4A 312 88.77 1tcaA 317 89.11 c.69.1.17 34726 2a0mA 316 89.90 c.42.1.1 125960