# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 7.72e-17 a.35.1.5,c.93.1.1 66652,66653 2fepA 289 2.39e-13 2o20A 332 2.89e-13 3c3kA 285 1.51e-12 1dbqA 289 3.53e-12 c.93.1.1 35666 3brqA 296 7.54e-12 2rgyA 290 9.07e-12 1jyeA 349 1.09e-11 c.93.1.1 67455 3bilA 348 1.33e-11 2iksA 293 2.04e-11 2ioyA 283 2.83e-11 3bblA 287 3.01e-11 3ctpA 330 4.33e-11 2fn9A 290 5.12e-11 2qu7A 288 5.47e-11 3cs3A 277 1.32e-10 3clkA 290 1.36e-10 2driA 271 1.70e-10 c.93.1.1 35637 2dri 271 2.61e-10 3brsA 289 3.47e-10 2fvyA 309 4.36e-10 c.93.1.1 134227 1bykA 255 5.20e-10 c.93.1.1 35706 8abpA 306 6.95e-10 c.93.1.1 35647 3d02A 303 7.82e-10 2qvcA 313 8.30e-10 1gca 309 1.11e-09 8abp 306 1.23e-09 1jx6A 342 2.60e-09 c.93.1.1 67406 2h0aA 276 3.28e-09 1tjyA 316 5.01e-09 c.93.1.1 107062 2h3hA 313 6.48e-09 3c6qA 311 8.16e-09 1gudA 288 9.29e-09 c.93.1.1 83326 2rjoA 332 5.09e-08 2fqxA 318 3.07e-07 2qh8A 302 2.54e-06 2hqbA 296 9.35e-06 1usgA 346 0.01311 c.93.1.1 99864 1z15A 344 0.02061 1peaA 385 0.3208 c.93.1.1 35662 1pea 385 0.5203 3ckmA 327 0.6470 2e4uA 555 1.838 1udcA 338 2.275 c.2.1.2 29785 2h4aA 325 2.525 1jdpA 441 2.604 c.93.1.1 62906 1ewkA 490 2.830 c.93.1.1 35712 1edzA 320 3.683 c.2.1.7,c.58.1.2 30287,33935 1t2aA 375 5.536 c.2.1.2 99078 1ek6A 348 5.593 c.2.1.2 29800 1dp4A 435 6.120 c.93.1.1 35710 2gasA 307 6.142 1vi2A 300 6.670 c.2.1.7,c.58.1.5 100726,100727 1q1rA 431 6.763 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2vlbA 251 6.819 1iowA 306 8.365 c.30.1.2,d.142.1.1 31713,41481 2q88A 257 9.053 1ehiA 377 9.092 c.30.1.2,d.142.1.1 31716,41484 1dv1A 449 10.42 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1jflA 228 10.62 c.78.2.1,c.78.2.1 71656,71657 1kjqA 391 10.96 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2exxA 306 11.56 1iow 306 11.93 1sb8A 352 13.96 c.2.1.2 105410 2z1mA 345 14.35 2pk3A 321 14.36 2qghA 425 14.69 1wdpA 495 15.07 c.1.8.1 120907 1x13A 401 16.69 3c1oA 321 18.09 1e4iA 447 18.19 c.1.8.4 59225 1nvmA 345 18.26 a.5.7.1,c.1.10.5 86249,86250 1gdhA 320 18.36 c.2.1.4,c.23.12.1 30095,31355 1xhcA 367 19.06 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2eq5A 228 19.16 1v8fA 276 19.82 c.26.1.4 100503 1orrA 347 19.82 c.2.1.2 93460 2d1cA 496 20.04 3b8dA 363 20.96 1i24A 404 22.47 c.2.1.2 83663 1m33A 258 22.67 c.69.1.26 78514 1o60A 292 24.85 c.1.10.4 92532 1zud1 251 26.46 1pbgA 468 26.68 c.1.8.4 28946 2yrxA 451 26.88 1a4iA 301 27.19 c.2.1.7,c.58.1.2 30278,33926 2gcgA 330 27.70 2ggsA 273 27.81 1wcgA 464 27.92 c.1.8.4 120888 1wd7A 261 28.01 c.113.1.1 114526 1n7hA 381 29.03 c.2.1.2 80250 1rkxA 357 29.43 c.2.1.2 97631 1ihoA 283 29.62 c.26.1.4 62390 1g5aA 628 29.92 b.71.1.1,c.1.8.1 65152,65153 1ir6A 424 30.02 c.107.1.2 71342 1pii 452 30.74 1gnxA 479 31.12 c.1.8.4 76241 1i2cA 404 31.14 c.2.1.2 83666 2c4wA 176 31.41 2c5aA 379 32.21 c.2.1.2 129894 1ug6A 431 32.40 c.1.8.4 88490 2r6jA 318 33.20 1zxxA 319 33.73 1h05A 146 34.19 c.23.13.1 76433 2q3bA 313 34.43 1wx1A 335 35.02 2dgdA 223 35.35 1wcwA 261 35.61 1y8qB 640 36.53 2dwcA 433 37.02 1ygyA 529 37.98 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1h3fA 432 38.07 c.26.1.1,d.66.1.4 76631,76632 1aq0A 306 38.17 c.1.8.3 28842 1dv2A 452 38.19 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1y8qA 346 39.15 2ag6A 314 39.55 2nwrA 267 39.70 1uqrA 154 39.79 c.23.13.1 99779 1zhaA 267 41.58 1rw7A 243 41.90 c.23.16.2 97963 1piiA 452 43.58 c.1.2.4,c.1.2.4 28559,28563 1qvzA 237 43.90 c.23.16.2 96453 2cukA 311 43.90 1gy8A 397 44.61 c.2.1.2 83376 1gtzA 156 44.96 c.23.13.1 70539 1vffA 423 45.09 c.1.8.4 120033 2q02A 272 45.26 1li4A 432 45.45 c.2.1.4,c.23.12.3 84616,84617 2q5cA 196 45.86 2hk9A 275 46.45 1qh8A 478 46.98 c.92.2.3 35633 1wr8A 231 47.75 c.108.1.10 114836 1n2eA 300 47.81 c.26.1.4 85268 1b0aA 288 48.27 c.2.1.7,c.58.1.2 30286,33934 1nhsA 447 48.43 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2iuyA 342 48.70 1toaA 313 49.87 c.92.2.2 35598 1b8oA 284 49.89 c.56.2.1 33762 1c7sA 858 50.14 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1gpmA 525 50.49 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2v3aA 384 50.95 1sznA 417 51.60 b.71.1.1,c.1.8.1 106162,106163 1x3mA 415 52.19 c.55.1.2,c.55.1.2 121664,121665 1oc2A 348 52.46 c.2.1.2 92765 1a0p 290 53.82 1zu0A 529 54.46 1a99A 344 55.26 c.94.1.1 35812 1khdA 345 55.45 a.46.2.1,c.27.1.1 77400,77401 2pzmA 330 56.23 1ymqA 261 56.71 c.108.1.10 123707 1sgjA 284 57.16 c.1.12.5 105535 1pe1A 267 58.32 c.1.10.4 94591 1ta9A 450 59.41 1ks9A 291 59.53 a.100.1.7,c.2.1.6 68857,68858 1n7kA 234 59.94 c.1.10.1 85374 1j5sA 463 60.71 c.1.9.8 71580 1p1xA 260 60.96 c.1.10.1 104060 1a0pA 290 61.97 a.60.9.1,d.163.1.1 18105,42165 2rbkA 261 62.22 2dvtA 327 62.64 c.1.9.15 131793 2p0aA 344 63.44 1potA 325 64.12 c.94.1.1 35807 2vefA 314 64.71 2v6oA 596 64.72 1jq5A 370 65.33 e.22.1.2 67084 3ciwA 348 65.36 1pot 325 65.96 1t5oA 351 66.20 c.124.1.5 106459 1l5oA 356 66.80 c.39.1.1 77711 1vemA 516 67.04 b.3.1.1,c.1.8.1 120021,120022 2vq3A 215 67.23 1fl2A 310 67.46 c.3.1.5,c.3.1.5 59869,59870 2g76A 335 67.79 1pswA 348 67.81 c.87.1.7 88287 1mpxA 615 69.73 b.18.1.13,c.69.1.21 85041,85042 1vhqA 232 70.08 c.23.16.2 100696 2jfzA 255 70.13 1uc8A 280 70.25 c.30.1.6,d.142.1.7 99165,99166 1ve1A 304 70.28 c.79.1.1 120007 1xq6A 253 71.15 c.2.1.2 115829 2hufA 393 72.31 1hdoA 206 72.37 c.2.1.2 60965 2q46A 253 72.63 c.2.1.2 139825 1to6A 371 73.03 c.141.1.1 107170 2hzgA 401 73.12 2cw6A 298 73.56 1gsoA 431 73.64 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2uxqA 402 73.74 2qytA 317 74.05 1a8qA 274 74.17 c.69.1.12 34702 2cyaA 364 74.30 1bedA 181 75.16 c.47.1.13 90330 2f6kA 307 75.55 c.1.9.15 133047 1tuoA 464 76.91 1t4bA 367 78.64 c.2.1.3,d.81.1.1 106406,106407 1zuwA 272 78.70 1wkvA 389 79.23 c.79.1.1 120989 1jw9B 249 79.27 c.111.1.1 67377 1o58A 303 79.27 c.79.1.1 92491 2glxA 332 79.32 2vojA 371 83.03 2fb2A 340 83.67 1s6yA 450 85.41 c.2.1.5,d.162.1.2 105314,105315 1j0dA 341 85.77 c.79.1.1 83902 2o1mA 258 85.89 1eyeA 280 86.27 c.1.21.1 29672 1rkqA 282 86.41 c.108.1.10 97621 2bywA 418 87.58 c.95.1.1,c.95.1.1 129498,129499 1r0kA 388 89.41 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725