# List of top-scoring protein chains for T0441.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hsgA 332 1.05e-30 a.35.1.5,c.93.1.1 136722,136723 2jcgA 332 1.31e-30 1jh9A 340 1.36e-29 a.35.1.5,c.93.1.1 66710,66711 1qpzA 340 1.61e-29 a.35.1.5,c.93.1.1 17097,35673 2pucA 340 1.63e-29 a.35.1.5,c.93.1.1 17094,35684 2pugA 340 1.66e-29 a.35.1.5,c.93.1.1 17088,35683 1qqbA 340 1.68e-29 a.35.1.5,c.93.1.1 17099,35674 1jftA 340 1.86e-29 a.35.1.5,c.93.1.1 66652,66653 1jfsA 340 1.96e-29 a.35.1.5,c.93.1.1 66650,66651 1vpwA 340 2.04e-29 a.35.1.5,c.93.1.1 17087,35680 2o20A 332 2.04e-28 3ctpA 330 3.13e-27 1lbiA 360 1.92e-24 c.93.1.1 35694 1jyfA 349 1.93e-24 c.93.1.1 67456 1efaA 333 1.96e-24 a.35.1.5,c.93.1.1 17106,35691 1jyeA 349 2.08e-24 c.93.1.1 67455 2pe5A 330 4.11e-24 3bilA 348 4.53e-24 2nzuG 280 5.04e-24 c.93.1.1 138854 2fepA 289 7.17e-24 1dbqA 289 1.51e-23 c.93.1.1 35666 1jhzA 289 1.87e-23 c.93.1.1 66731 3brqA 296 5.43e-22 3bblA 287 1.79e-20 3c3kA 285 6.08e-20 2rgyA 290 1.75e-19 3clkA 290 9.89e-19 2qu7A 288 9.84e-18 1tlfA 301 4.46e-17 c.93.1.1 35687 2p9hA 269 7.25e-17 c.93.1.1 139580 3cs3A 277 5.60e-16 2iksA 293 2.56e-14 2h0aA 276 3.25e-14 2ioyA 283 1.47e-12 2gx6A 278 6.15e-12 1dbpA 271 9.73e-12 c.93.1.1 35639 2driA 271 1.12e-11 c.93.1.1 35637 1ba2A 271 1.16e-11 c.93.1.1 35640 1drjA 271 1.33e-11 c.93.1.1 35642 1drkA 271 1.39e-11 c.93.1.1 35638 1bykA 255 5.75e-11 c.93.1.1 35706 2fn9A 290 8.66e-10 2fn8A 303 9.25e-10 1gudA 288 2.27e-07 c.93.1.1 83326 2bjcA 62 3.01e-07 a.35.1.5 128620 1cjgA 62 3.93e-07 a.35.1.5 17112 1l1mA 62 4.67e-07 a.35.1.5 73474 1lqcA 56 1.21e-06 a.35.1.5 17109 1pruA 56 2.37e-06 a.35.1.5 17104 2qvcA 313 5.46e-06 1lccA 51 5.65e-06 a.35.1.5 17110 2h3hA 313 8.55e-06 3c6qA 311 1.14e-05 1uxcA 65 7.93e-05 a.35.1.5 17119 3brsA 289 0.000144 2rjoA 332 0.000536 2ipnA 318 0.000549 2fvyA 309 0.000633 c.93.1.1 134227 2hphA 316 0.000652 c.93.1.1 136652 2ipmA 318 0.000692 2iplA 318 0.001006 3gbpA 307 0.001269 c.93.1.1 35661 1gcaA 309 0.001277 c.93.1.1 35659 8abpA 306 0.5307 c.93.1.1 35647 1abeA 306 0.5353 c.93.1.1 35648 1bapA 306 0.5834 c.93.1.1 35654 1zhhA 344 0.6613 c.93.1.1 125095 1jx6A 342 0.6635 c.93.1.1 67406 2hj9A 339 0.6657 c.93.1.1 136538 2fqxA 318 0.8370 6pfkA 319 1.744 c.89.1.1 35583 1mtoA 319 2.019 c.89.1.1 79458 4pfkA 319 2.121 c.89.1.1 35582 3d02A 303 3.346 1tjyA 316 9.174 c.93.1.1 107062 1tybE 319 25.36 c.26.1.1 31569 1d1gA 168 26.91 c.71.1.1 34889 1tyaE 319 31.63 c.26.1.1 31570 2qwtA 196 33.18 2gmgA 105 33.87 3c2xA 171 38.82 1w9hA 427 40.56 c.55.3.10 120785 2jj7A 186 40.76 2fx0A 201 42.54 a.4.1.9,a.121.1.1 134269,134270 1rvv1 154 45.61 1pfkA 320 46.23 c.89.1.1 35575 1tydE 319 46.76 c.26.1.1 31567 2ts1A 419 49.83 c.26.1.1 31564 4ts1A 319 51.07 c.26.1.1 31565 3b7hA 78 57.28 1yt8A 539 60.12 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1tycA 319 60.95 c.26.1.1 31568 1cqjB 385 62.86 c.23.4.1,d.142.1.4 31143,41564 2i14A 395 63.22 c.1.17.1,d.41.2.1 136966,136967 2nu8B 388 63.25 1jllB 388 64.20 c.23.4.1,d.142.1.4 66853,66854 1lkvX 232 70.45 a.118.14.1 73980 1zuaX 317 78.03 1xtqA 177 78.65 c.37.1.8 122297 3bwdD 182 78.99 2ictA 94 80.64 2of7A 260 84.85 2pfrA 294 85.13 2yy8A 201 85.50 2rasA 212 86.43 1pgjA 478 86.90 a.100.1.1,c.2.1.6 18783,30195 1yckA 175 87.19 d.118.1.1 122968 1rkdA 309 87.44 c.72.1.1 34928 1k7jA 206 89.18 d.115.1.1 72103