# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 9.54e-33 a.35.1.5,c.93.1.1 66652,66653 2rgyA 290 3.37e-28 2fepA 289 3.79e-28 3brqA 296 6.10e-28 3c3kA 285 6.61e-28 3bblA 287 6.65e-28 2iksA 293 8.50e-28 2o20A 332 8.69e-28 3bilA 348 1.20e-26 3ctpA 330 1.41e-26 2qu7A 288 2.06e-26 3cs3A 277 3.79e-26 1dbqA 289 8.57e-26 c.93.1.1 35666 1jyeA 349 4.99e-25 c.93.1.1 67455 1tlfA 301 6.22e-25 c.93.1.1 35687 3clkA 290 6.44e-25 2ioyA 283 3.73e-24 2driA 271 6.60e-24 c.93.1.1 35637 2h0aA 276 6.68e-24 1bykA 255 2.86e-23 c.93.1.1 35706 1jx6A 342 3.03e-23 c.93.1.1 67406 2fn9A 290 3.63e-23 2dri 271 5.51e-23 2fvyA 309 6.22e-22 c.93.1.1 134227 3brsA 289 6.34e-22 2rjoA 332 1.95e-21 3d02A 303 3.11e-21 1tjyA 316 3.15e-21 c.93.1.1 107062 1gca 309 3.16e-21 8abp 306 3.17e-21 2h3hA 313 9.49e-21 2qvcA 313 1.00e-20 8abpA 306 2.46e-20 c.93.1.1 35647 2qh8A 302 5.56e-20 3c6qA 311 5.95e-20 1gudA 288 7.08e-20 c.93.1.1 83326 2fqxA 318 1.49e-17 2hqbA 296 1.89e-15 2bjcA 62 6.73e-08 a.35.1.5 128620 1cjgA 62 7.18e-08 a.35.1.5 17112 3ckmA 327 0.002970 1peaA 385 0.003192 c.93.1.1 35662 2h4aA 325 0.003568 1usgA 346 0.01550 c.93.1.1 99864 1z15A 344 0.01684 2liv 344 0.03991 2e4uA 555 0.07942 1zxxA 319 0.2009 1ewkA 490 0.2112 c.93.1.1 35712 1jdpA 441 0.2660 c.93.1.1 62906 1dp4A 435 0.8908 c.93.1.1 35710 1pea 385 0.9662 2pfkA 320 1.533 c.89.1.1 35577 2c4wA 176 3.103 1vljA 407 3.803 e.22.1.2 108832 1uqrA 154 6.173 c.23.13.1 99779 2yx0A 342 6.282 2qq9A 226 6.591 1fx7A 230 7.562 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2bdtA 189 7.711 c.37.1.25 128344 1pfkA 320 8.219 c.89.1.1 35575 2ebyA 113 8.442 1wd7A 261 9.207 c.113.1.1 114526 2i33A 258 9.480 1wcwA 261 9.842 3cecA 104 10.46 2bdqA 224 11.40 1pwhA 327 11.75 c.79.1.1 95224 2hlkA 255 12.27 1dnpA 471 12.28 a.99.1.1,c.28.1.1 18775,31630 2j5bA 348 13.96 2ictA 94 14.06 1imjA 210 14.65 c.69.1.23 71246 2aumA 317 15.35 c.8.10.1,c.23.16.7 127330,127331 1nsjA 205 17.37 c.1.2.4 28560 1h05A 146 18.16 c.23.13.1 76433 1gtzA 156 19.41 c.23.13.1 70539 1d0iA 156 20.42 c.23.13.1 31383 2h09A 155 20.93 1rrmA 386 21.21 e.22.1.2 105081 1xi3A 215 21.23 c.1.3.1 109601 2dgdA 223 21.45 1dhpA 292 24.22 c.1.10.1 29097 1fkx 349 24.57 2dtrA 226 25.60 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1on2A 142 25.94 a.4.5.24,a.76.1.1 87103,87104 2nu8B 388 27.34 2aunA 317 27.36 c.8.10.1,c.23.16.7 127334,127335 1n4aA 252 27.99 c.92.2.2 85317 1zejA 293 28.37 4ts1A 319 28.45 c.26.1.1 31565 1vb3A 428 28.94 c.79.1.1 119942 1owlA 484 29.33 a.99.1.1,c.28.1.1 93647,93648 1pb6A 212 30.12 a.4.1.9,a.121.1.1 88017,88018 1o5kA 306 30.84 c.1.10.1 92504 3bs3A 76 31.03 1x7oA 287 31.48 1tezA 474 33.18 a.99.1.1,c.28.1.1 112409,112410 1geqA 248 34.01 c.1.2.4 28589 2hxoA 237 34.89 2dtr 226 35.22 2b5aA 77 36.00 a.35.1.3 127882 1wstA 417 36.33 c.67.1.1 121244 2o6lA 170 36.81 2vd8A 391 36.81 1y9qA 192 37.19 a.35.1.8,b.82.1.15 116592,116593 1jflA 228 38.09 c.78.2.1,c.78.2.1 71656,71657 1hlvA 131 38.12 a.4.1.7,a.4.1.7 65854,65855 1q6oA 216 38.88 c.1.2.3 95986 2o3fA 111 39.04 2nq5A 755 39.54 1vh7A 265 40.09 c.1.2.1 100646 2r7aA 256 40.12 1v7cA 351 40.88 c.79.1.1 100446 3bq5A 766 41.49 1z77A 200 42.11 a.4.1.9,a.121.1.1 124588,124589 2dhqA 146 42.85 c.23.13.1 31382 1r88A 280 42.89 c.69.1.3 97219 1w3iA 293 43.49 c.1.10.1 109152 1t33A 224 44.19 a.4.1.9,a.121.1.1 106295,106296 1sfxA 109 44.31 a.4.5.50 105505 1mkyA 439 44.81 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1x6vA 630 45.57 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1p5jA 372 45.89 c.79.1.1 104067 2d1hA 109 47.03 a.4.5.50 131125 1zrsA 317 47.21 c.8.10.1,c.23.16.7 125556,125557 1tv8A 340 48.41 c.1.28.3 107352 1u3eM 174 48.52 d.4.1.3,d.285.1.1 107640,107641 3bd1A 79 48.67 1ulyA 192 50.75 a.4.5.58 113297 1vflA 356 51.43 c.1.9.1 120041 2au3A 407 51.56 1sgmA 191 51.61 a.4.1.9,a.121.1.1 105537,105538 1twdA 256 52.93 c.1.30.1 107397 1nal1 297 53.32 1hl2A 297 54.14 c.1.10.1 83581 1oivA 191 54.59 c.37.1.8 93076 2fliA 220 55.05 c.1.2.2 133714 1zl0A 311 55.07 c.8.10.1,c.23.16.7 125231,125232 1thfD 253 55.18 c.1.2.1 28535 1y7yA 74 55.22 a.35.1.3 122729 1vz0A 230 55.94 a.4.14.1,d.268.1.1 108929,108930 1u8zA 168 56.12 c.37.1.8 113212 2ajtA 500 56.63 b.43.2.2,c.85.1.2 126894,126895 1z91A 147 59.31 a.4.5.28 124736 1zq1A 438 59.64 b.38.3.1,c.88.1.1 125489,125490 1gz0A 253 59.98 c.116.1.1,d.79.3.3 76391,76392 2nzxA 371 59.99 2zayA 147 60.04 2bnmA 198 60.60 a.35.1.3,b.82.1.10 128835,128836 1amp 291 60.92 1u3wA 374 61.78 b.35.1.2,c.2.1.1 113013,113014 2gzmA 267 61.79 3b7hA 78 62.29 1ys7A 233 62.48 a.4.6.1,c.23.1.1 123961,123962 2v9dA 343 63.62 1u5hA 273 64.68 c.1.12.5 113037 1tcvA 287 64.90 1o66A 275 67.18 c.1.12.8 92547 2qjwA 176 67.63 8dfrA 189 67.90 c.71.1.1 34895 1qlwA 328 68.18 c.69.1.15 34722 1din 236 68.66 1eudB 396 68.85 c.23.4.1,d.142.1.4 31150,41571 1fyeA 229 68.86 c.23.16.4 31477 1adrA 76 70.58 a.35.1.2 17042 1vemA 516 71.30 b.3.1.1,c.1.8.1 120021,120022 2c4nA 250 71.36 c.108.1.14 129837 1w1iE 357 71.77 c.1.9.1 109051 2a6lA 292 74.32 c.1.10.1 126285 1mzjA 339 75.12 c.95.1.2,c.95.1.2 79700,79701 1bd0A 388 76.52 b.49.2.2,c.1.6.1 26480,28642 2nx4A 194 76.64 1zccA 248 77.35 c.1.18.3 124903 1qnf 484 77.47 1dwkA 156 78.09 a.35.1.4,d.72.1.1 17075,39606 1lsuA 147 79.33 c.2.1.9 74250 2pe3A 354 79.50 2iu5A 195 79.70 1b0nA 111 80.42 a.34.1.1,a.35.1.3 17001,17064 2oogA 287 80.52 2jfuA 291 80.60 1lnwA 147 81.73 a.4.5.28 78104 1jhgA 101 81.98 a.4.12.1 19009 1r2qA 170 82.03 c.37.1.8 96874 2zdrA 349 82.33 1z7yA 322 82.37 c.79.1.1 124679 1jq5A 370 82.55 e.22.1.2 67084 1utxA 66 83.23 a.35.1.3 108034 1z06A 189 83.24 c.37.1.8 124301 1ivnA 190 83.43 c.23.10.5 83719 1ta9A 450 83.86 2id6A 202 84.71 2fp4B 395 86.20 c.23.4.1,d.142.1.4 133897,133898 1w77A 228 86.62 c.68.1.13 120679 1v7bA 185 87.10 a.4.1.9,a.121.1.1 119861,119862 1qe5A 266 87.63 c.56.2.1 33784 2i6jA 161 87.63 1hw6A 278 88.34 c.1.7.1 61296 1eyzA 392 89.29 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498