# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 6.20e-33 a.35.1.5,c.93.1.1 66652,66653 2rgyA 290 2.80e-28 2fepA 289 2.95e-28 3bblA 287 4.54e-28 3brqA 296 6.43e-28 3c3kA 285 7.18e-28 2iksA 293 7.77e-28 2o20A 332 8.23e-28 3ctpA 330 7.32e-27 3bilA 348 8.51e-27 2qu7A 288 2.10e-26 3cs3A 277 4.68e-26 1dbqA 289 1.72e-25 c.93.1.1 35666 1jyeA 349 4.66e-25 c.93.1.1 67455 1tlfA 301 8.20e-25 c.93.1.1 35687 2ioyA 283 3.18e-24 2driA 271 4.36e-24 c.93.1.1 35637 2h0aA 276 6.06e-24 1jx6A 342 2.50e-23 c.93.1.1 67406 1bykA 255 2.91e-23 c.93.1.1 35706 2fn9A 290 4.61e-23 3clkA 290 6.05e-23 2dri 271 7.57e-23 2fvyA 309 6.27e-22 c.93.1.1 134227 3brsA 289 1.08e-21 1tjyA 316 1.62e-21 c.93.1.1 107062 3d02A 303 1.86e-21 2rjoA 332 2.46e-21 1gca 309 4.97e-21 8abp 306 5.09e-21 2qvcA 313 8.42e-21 2h3hA 313 1.02e-20 8abpA 306 2.18e-20 c.93.1.1 35647 3c6qA 311 8.51e-20 2qh8A 302 8.70e-20 1gudA 288 1.43e-19 c.93.1.1 83326 2fqxA 318 6.32e-18 2hqbA 296 6.56e-16 2bjcA 62 4.57e-08 a.35.1.5 128620 1cjgA 62 8.26e-08 a.35.1.5 17112 3ckmA 327 0.006654 2h4aA 325 0.01023 1z15A 344 0.01332 1usgA 346 0.01467 c.93.1.1 99864 2liv 344 0.02521 1peaA 385 0.02692 c.93.1.1 35662 1zxxA 319 0.05708 2e4uA 555 0.1411 2pfkA 320 0.2374 c.89.1.1 35577 1ewkA 490 0.3057 c.93.1.1 35712 1jdpA 441 0.5148 c.93.1.1 62906 1pea 385 0.8648 1dp4A 435 1.464 c.93.1.1 35710 1pfkA 320 1.558 c.89.1.1 35575 1vljA 407 3.465 e.22.1.2 108832 1wd7A 261 3.752 c.113.1.1 114526 2ebyA 113 4.904 3cecA 104 5.252 2nu8B 388 5.671 1wcwA 261 5.694 2b5aA 77 6.306 a.35.1.3 127882 2qq9A 226 7.159 2bdtA 189 7.476 c.37.1.25 128344 1fx7A 230 7.691 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2i33A 258 7.852 2c4wA 176 9.099 1rvv1 154 9.330 1y9qA 192 9.703 a.35.1.8,b.82.1.15 116592,116593 1geqA 248 10.06 c.1.2.4 28589 1q6oA 216 10.79 c.1.2.3 95986 2ictA 94 10.85 1uqrA 154 10.96 c.23.13.1 99779 2hmcA 344 11.47 2obxA 157 13.24 2hlkA 255 14.47 2h09A 155 15.33 2yv1A 294 15.71 1ukz 203 15.90 1utxA 66 16.32 a.35.1.3 108034 1hqkA 154 16.98 c.16.1.1 65902 1on2A 142 17.82 a.4.5.24,a.76.1.1 87103,87104 1o5kA 306 19.19 c.1.10.1 92504 1w3iA 293 19.54 c.1.10.1 109152 1hlvA 131 19.70 a.4.1.7,a.4.1.7 65854,65855 2fp4B 395 19.72 c.23.4.1,d.142.1.4 133897,133898 1z5oA 242 19.78 1adrA 76 20.52 a.35.1.2 17042 2yx0A 342 21.88 3bs3A 76 22.54 1y7yA 74 22.59 a.35.1.3 122729 1xi3A 215 23.12 c.1.3.1 109601 1z5nA 242 23.80 2r1jL 68 24.06 2bnmA 198 24.25 a.35.1.3,b.82.1.10 128835,128836 1vb3A 428 24.95 c.79.1.1 119942 1z77A 200 26.26 a.4.1.9,a.121.1.1 124588,124589 2iw0A 254 26.54 c.6.2.3 137737 1t33A 224 26.67 a.4.1.9,a.121.1.1 106295,106296 1pb6A 212 26.71 a.4.1.9,a.121.1.1 88017,88018 1s2oA 244 26.89 c.108.1.10 118846 1rktA 205 28.14 a.4.1.9,a.121.1.1 97623,97624 1sfxA 109 29.04 a.4.5.50 105505 2igpA 120 29.62 1zejA 293 30.78 1tcvA 287 31.48 2i0fA 157 32.69 1eudB 396 32.74 c.23.4.1,d.142.1.4 31150,41571 2ax4A 198 32.86 1ui5A 215 32.93 a.4.1.9,a.121.1.1 107856,107857 1vz0A 230 33.22 a.4.14.1,d.268.1.1 108929,108930 3bdiA 207 33.46 2hxoA 237 33.98 1gtzA 156 34.08 c.23.13.1 70539 1pwhA 327 35.04 c.79.1.1 95224 1nsjA 205 36.22 c.1.2.4 28560 1n4aA 252 36.62 c.92.2.2 85317 3b7hA 78 37.63 1b0nA 111 38.04 a.34.1.1,a.35.1.3 17001,17064 1mkyA 439 39.24 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2c92A 160 39.98 2qddA 378 40.03 3c2qA 345 40.46 1lsuA 147 41.13 c.2.1.9 74250 2higA 487 41.24 2ekcA 262 41.52 2j5bA 348 41.78 3c9uA 342 41.96 1v7bA 185 42.04 a.4.1.9,a.121.1.1 119861,119862 1d0iA 156 42.17 c.23.13.1 31383 1fkx 349 42.60 2v9dA 343 42.78 1tezA 474 43.02 a.99.1.1,c.28.1.1 112409,112410 1ejbA 168 43.61 c.16.1.1 59417 1vi0A 206 44.19 a.4.1.9,a.121.1.1 100720,100721 2g0wA 296 44.21 c.1.15.4 134503 2rfgA 297 45.33 1owlA 484 46.12 a.99.1.1,c.28.1.1 93647,93648 1sgmA 191 46.12 a.4.1.9,a.121.1.1 105537,105538 2r7aA 256 46.85 2d2jA 329 47.07 c.1.9.3 131175 2dtr 226 47.72 2dtrA 226 49.45 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qcoA 210 49.62 2a6lA 292 49.89 c.1.10.1 126285 2aumA 317 50.14 c.8.10.1,c.23.16.7 127330,127331 1hl2A 297 50.18 c.1.10.1 83581 1zccA 248 52.29 c.1.18.3 124903 2d1hA 109 52.41 a.4.5.50 131125 1scuA 288 52.58 c.2.1.8,c.23.4.1 30307,31135 2oogA 287 52.89 2id6A 202 53.07 1r88A 280 53.17 c.69.1.3 97219 1zk8A 183 53.58 a.4.1.9,a.121.1.1 125177,125178 1vd6A 224 56.14 c.1.18.3 119991 2qwtA 196 56.73 1wkaA 147 56.76 b.51.1.1 120978 1ulyA 192 56.99 a.4.5.58 113297 3d0cA 314 57.30 1qvtA 194 57.88 a.4.1.9,a.121.1.1 104602,104603 1u2wA 122 57.91 a.4.5.5 119487 2iu5A 195 58.33 2qibA 231 59.14 1h05A 146 59.66 c.23.13.1 76433 1r1uA 106 59.67 a.4.5.5 104771 2oi8A 216 59.69 2bdqA 224 59.98 1u3eM 174 60.11 d.4.1.3,d.285.1.1 107640,107641 2o7tA 199 60.28 2cro 71 60.37 3bhqA 211 60.86 2nzxA 371 61.19 2rekA 199 61.47 1igs 248 62.47 2o3fA 111 62.70 1jt6A 188 62.91 a.4.1.9,a.121.1.1 67247,67248 1lnwA 147 63.11 a.4.5.28 78104 1l9xA 315 63.33 c.23.16.1 73762 2fd5A 180 63.43 a.4.1.9,a.121.1.1 133291,133292 2raeA 207 63.69 3ch0A 272 64.58 1knqA 175 64.77 c.37.1.17 72786 1y7pA 223 65.67 c.23.1.7,d.58.18.12 122708,122709 2gruA 368 65.74 2ehhA 294 65.81 2r91A 286 65.93 1jhgA 101 66.86 a.4.12.1 19009 1zkgA 212 67.06 a.4.1.9,a.121.1.1 125194,125195 1dhpA 292 67.83 c.1.10.1 29097 1p5jA 372 68.26 c.79.1.1 104067 2ojpA 292 68.37 1vflA 356 69.76 c.1.9.1 120041 2dg8A 193 70.08 1udzA 182 70.43 b.51.1.1 99239 1a53 247 70.71 2jfuA 291 71.06 2nx4A 194 71.47 1x19A 359 71.94 1dnpA 471 72.52 a.99.1.1,c.28.1.1 18775,31630 1qnf 484 72.91 1imjA 210 73.61 c.69.1.23 71246 1r69A 69 73.76 a.35.1.2 17028 2a61A 145 75.02 a.4.5.28 126187 2cc0A 195 75.03 c.6.2.3 130209 2f07A 197 75.18 1vgyA 393 76.42 c.56.5.4,d.58.19.1 100620,100621 2croA 71 76.44 a.35.1.2 17038 4ts1A 319 76.50 c.26.1.1 31565 2ev0A 142 76.75 a.4.5.24,a.76.1.1 132413,132414 1zh2A 121 76.81 c.23.1.1 125069 2qzjA 136 76.99 1gz0A 253 77.13 c.116.1.1,d.79.3.3 76391,76392 1qpoA 284 77.18 c.1.17.1,d.41.2.1 29561,38597 1z91A 147 77.91 a.4.5.28 124736 2hytA 197 78.28 1tv8A 340 79.84 c.1.28.3 107352 1u5hA 273 80.36 c.1.12.5 113037 1din 236 81.14 2q24A 194 81.16 1mzjA 339 81.61 c.95.1.2,c.95.1.2 79700,79701 1xbyA 216 81.63 c.1.2.3 121846 1nal1 297 82.06 3c86A 328 82.39 2oq2A 261 82.66 1oywA 523 82.93 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1q9uA 130 83.32 d.129.7.1 96314 2g3bA 208 84.08 a.4.1.9,a.121.1.1 134558,134559 1t56A 216 84.44 a.4.1.9,a.121.1.1 106428,106429 1r69 69 84.73 1wnyA 186 84.80 2vprA 207 85.53 1y7lA 316 86.08 c.79.1.1 122695 1zp4A 304 86.09 1vbjA 281 86.14 1t13A 158 86.41 3crjA 199 86.78 1r2qA 170 87.40 c.37.1.8 96874 2fbhA 146 87.67 a.4.5.28 133245 1c4oA 664 87.83 c.37.1.19,c.37.1.19 32415,32416 2a6nA 292 87.96 c.1.10.1 126289 2bleA 367 88.70 2pezA 179 88.77 1jysA 242 88.90 c.56.2.1 77216 1ivnA 190 89.21 c.23.10.5 83719 1dwkA 156 89.29 a.35.1.4,d.72.1.1 17075,39606 2qtqA 213 89.96