# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 2.50e-33 a.35.1.5,c.93.1.1 66652,66653 2rgyA 290 9.67e-29 2fepA 289 1.19e-28 3bblA 287 1.68e-28 3brqA 296 2.07e-28 3c3kA 285 2.81e-28 2o20A 332 2.97e-28 2iksA 293 2.98e-28 3ctpA 330 2.65e-27 3bilA 348 4.08e-27 2qu7A 288 6.12e-27 3cs3A 277 1.54e-26 1dbqA 289 5.48e-26 c.93.1.1 35666 1jyeA 349 2.11e-25 c.93.1.1 67455 1tlfA 301 3.85e-25 c.93.1.1 35687 2ioyA 283 1.12e-24 2driA 271 1.59e-24 c.93.1.1 35637 2h0aA 276 2.57e-24 1bykA 255 9.07e-24 c.93.1.1 35706 1jx6A 342 1.05e-23 c.93.1.1 67406 2fn9A 290 1.98e-23 3clkA 290 2.52e-23 2dri 271 3.24e-23 2fvyA 309 2.47e-22 c.93.1.1 134227 3brsA 289 3.90e-22 1tjyA 316 6.41e-22 c.93.1.1 107062 3d02A 303 7.43e-22 2rjoA 332 1.69e-21 8abp 306 1.82e-21 1gca 309 2.43e-21 2qvcA 313 3.33e-21 2h3hA 313 3.83e-21 8abpA 306 7.79e-21 c.93.1.1 35647 3c6qA 311 3.64e-20 2qh8A 302 3.65e-20 1gudA 288 7.15e-20 c.93.1.1 83326 2fqxA 318 1.91e-18 2hqbA 296 2.90e-16 2bjcA 62 3.37e-08 a.35.1.5 128620 1cjgA 62 5.50e-08 a.35.1.5 17112 3ckmA 327 0.003361 2h4aA 325 0.006321 1usgA 346 0.008533 c.93.1.1 99864 1z15A 344 0.008983 2liv 344 0.01808 1peaA 385 0.02304 c.93.1.1 35662 1zxxA 319 0.03450 2pfkA 320 0.08970 c.89.1.1 35577 2e4uA 555 0.09152 1ewkA 490 0.1799 c.93.1.1 35712 1jdpA 441 0.3235 c.93.1.1 62906 1pfkA 320 0.5810 c.89.1.1 35575 1dp4A 435 0.6880 c.93.1.1 35710 1pea 385 0.8482 1wd7A 261 2.738 c.113.1.1 114526 1vljA 407 3.473 e.22.1.2 108832 1wcwA 261 4.280 1geqA 248 6.356 c.1.2.4 28589 3cecA 104 6.695 2ebyA 113 6.720 1ukz 203 7.127 2nu8B 388 7.584 2i33A 258 7.651 2bdtA 189 7.712 c.37.1.25 128344 1q6oA 216 8.761 c.1.2.3 95986 1fx7A 230 9.201 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2hmcA 344 9.571 2qq9A 226 9.652 2c4wA 176 9.772 1rvv1 154 9.785 2b5aA 77 9.97 a.35.1.3 127882 1vb3A 428 10.87 c.79.1.1 119942 1uqrA 154 11.39 c.23.13.1 99779 1zejA 293 11.61 2ictA 94 12.88 2yv1A 294 12.90 1y9qA 192 13.15 a.35.1.8,b.82.1.15 116592,116593 1o5kA 306 13.30 c.1.10.1 92504 2yx0A 342 15.40 2obxA 157 16.15 2hlkA 255 16.39 1hqkA 154 16.67 c.16.1.1 65902 2iw0A 254 18.69 c.6.2.3 137737 2fp4B 395 19.57 c.23.4.1,d.142.1.4 133897,133898 1xi3A 215 20.08 c.1.3.1 109601 1utxA 66 21.20 a.35.1.3 108034 1w3iA 293 21.33 c.1.10.1 109152 1t33A 224 23.00 a.4.1.9,a.121.1.1 106295,106296 3bdiA 207 23.56 1nsjA 205 23.72 c.1.2.4 28560 3bs3A 76 24.30 2v9dA 343 25.91 1z77A 200 26.35 a.4.1.9,a.121.1.1 124588,124589 2h09A 155 26.43 2ekcA 262 26.46 2hxoA 237 26.73 1on2A 142 28.37 a.4.5.24,a.76.1.1 87103,87104 1pb6A 212 29.00 a.4.1.9,a.121.1.1 88017,88018 2i0fA 157 29.43 1z5nA 242 29.95 1z5oA 242 30.07 3c2qA 345 30.84 2rfgA 297 31.14 1zccA 248 31.42 c.1.18.3 124903 2qddA 378 32.33 1hlvA 131 32.58 a.4.1.7,a.4.1.7 65854,65855 2bnmA 198 32.59 a.35.1.3,b.82.1.10 128835,128836 1tcvA 287 33.33 1adrA 76 33.61 a.35.1.2 17042 2oogA 287 33.90 3d0cA 314 34.33 1rktA 205 34.76 a.4.1.9,a.121.1.1 97623,97624 1gtzA 156 34.92 c.23.13.1 70539 2ax4A 198 35.06 2c92A 160 35.20 1pwhA 327 35.49 c.79.1.1 95224 3ch0A 272 35.95 2qcoA 210 36.03 2g0wA 296 36.17 c.1.15.4 134503 1owlA 484 36.91 a.99.1.1,c.28.1.1 93647,93648 1gz0A 253 37.89 c.116.1.1,d.79.3.3 76391,76392 1hl2A 297 38.09 c.1.10.1 83581 1sgmA 191 38.55 a.4.1.9,a.121.1.1 105537,105538 1imjA 210 38.58 c.69.1.23 71246 1ui5A 215 38.59 a.4.1.9,a.121.1.1 107856,107857 1d0iA 156 38.82 c.23.13.1 31383 1y7yA 74 39.01 a.35.1.3 122729 2bdqA 224 39.22 2j5bA 348 40.42 1vd6A 224 40.54 c.1.18.3 119991 1zk8A 183 41.05 a.4.1.9,a.121.1.1 125177,125178 2d2jA 329 41.41 c.1.9.3 131175 1lsuA 147 41.52 c.2.1.9 74250 2ehhA 294 42.12 1tv8A 340 42.28 c.1.28.3 107352 1s2oA 244 42.69 c.108.1.10 118846 1dhpA 292 42.79 c.1.10.1 29097 1sfxA 109 42.90 a.4.5.50 105505 2nzxA 371 43.45 1vi0A 206 43.59 a.4.1.9,a.121.1.1 100720,100721 1fkx 349 43.82 1b0nA 111 43.90 a.34.1.1,a.35.1.3 17001,17064 1scuA 288 44.15 c.2.1.8,c.23.4.1 30307,31135 2dtr 226 44.82 1l9xA 315 45.25 c.23.16.1 73762 1dnpA 471 45.26 a.99.1.1,c.28.1.1 18775,31630 2r7aA 256 45.37 1vh7A 265 45.69 c.1.2.1 100646 2bleA 367 45.94 1eudB 396 45.98 c.23.4.1,d.142.1.4 31150,41571 1v7bA 185 47.00 a.4.1.9,a.121.1.1 119861,119862 1mkyA 439 47.42 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2r1jL 68 47.59 3b7hA 78 47.72 2higA 487 48.10 1knqA 175 48.36 c.37.1.17 72786 1igs 248 49.62 1vz0A 230 50.83 a.4.14.1,d.268.1.1 108929,108930 1ejbA 168 50.84 c.16.1.1 59417 1h05A 146 51.61 c.23.13.1 76433 1tezA 474 51.69 a.99.1.1,c.28.1.1 112409,112410 2fd5A 180 51.92 a.4.1.9,a.121.1.1 133291,133292 2qibA 231 52.58 2id6A 202 52.92 2a6lA 292 53.83 c.1.10.1 126285 2jfuA 291 54.57 2o7tA 199 54.85 1nal1 297 55.02 1p5jA 372 55.60 c.79.1.1 104067 2aumA 317 57.09 c.8.10.1,c.23.16.7 127330,127331 3c9uA 342 57.09 1u5hA 273 57.36 c.1.12.5 113037 2qwtA 196 57.71 2dg8A 193 57.90 1u3eM 174 60.54 d.4.1.3,d.285.1.1 107640,107641 1qnf 484 61.28 2ojpA 292 62.08 1yadA 221 62.17 1zkgA 212 63.36 a.4.1.9,a.121.1.1 125194,125195 2dztA 248 63.68 2r8wA 332 64.77 2gruA 368 64.87 2iu5A 195 65.17 2igpA 120 65.33 2f07A 197 66.21 1qpoA 284 66.22 c.1.17.1,d.41.2.1 29561,38597 1ojxA 263 67.53 c.1.10.1 93164 1xbyA 216 68.32 c.1.2.3 121846 3c86A 328 68.34 2r91A 286 69.01 1z91A 147 70.18 a.4.5.28 124736 1wstA 417 70.67 c.67.1.1 121244 2fliA 220 71.03 c.1.2.2 133714 1a53 247 71.36 1r88A 280 71.56 c.69.1.3 97219 2oi8A 216 71.93 1n4aA 252 72.06 c.92.2.2 85317 2oq2A 261 72.23 1jflA 228 73.21 c.78.2.1,c.78.2.1 71656,71657 2d1hA 109 73.34 a.4.5.50 131125 2rekA 199 73.66 2qzjA 136 73.87 1jysA 242 74.55 c.56.2.1 77216 2nx4A 194 74.98 1r2qA 170 75.03 c.37.1.8 96874 2vprA 207 75.13 2raeA 207 76.58 1zp4A 304 77.40 2i6dA 257 77.46 1qvtA 194 77.68 a.4.1.9,a.121.1.1 104602,104603 1y7pA 223 78.42 c.23.1.7,d.58.18.12 122708,122709 3bhqA 211 78.52 2hytA 197 79.24 1r1uA 106 79.29 a.4.5.5 104771 1jt6A 188 79.35 a.4.1.9,a.121.1.1 67247,67248 2cro 71 79.73 1g67A 225 81.15 c.1.3.1 60311 1amp 291 82.62 1qopA 268 84.06 c.1.2.4 28570 2purA 292 84.11 1din 236 84.31 2v1xA 591 84.54 2dtrA 226 84.59 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 3ccyA 203 85.05 2hkuA 215 85.19 3crjA 199 85.45 1vbjA 281 86.57 1ulyA 192 86.62 a.4.5.58 113297 2a6nA 292 87.23 c.1.10.1 126289 1vhoA 346 88.30 b.49.3.1,c.56.5.4 100694,100695 1gegA 256 89.14 c.2.1.2 29888 1oywA 523 89.49 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1x7oA 287 89.51 1zh2A 121 89.84 c.23.1.1 125069