# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 6.44e-33 a.35.1.5,c.93.1.1 66652,66653 2rgyA 290 2.10e-28 2fepA 289 3.00e-28 3brqA 296 3.75e-28 3bblA 287 3.85e-28 3c3kA 285 5.13e-28 2o20A 332 5.40e-28 2iksA 293 7.66e-28 3ctpA 330 6.73e-27 3bilA 348 9.52e-27 2qu7A 288 1.16e-26 3cs3A 277 3.08e-26 1dbqA 289 1.01e-25 c.93.1.1 35666 1jyeA 349 3.74e-25 c.93.1.1 67455 1tlfA 301 8.85e-25 c.93.1.1 35687 2ioyA 283 2.94e-24 2driA 271 3.17e-24 c.93.1.1 35637 2h0aA 276 5.21e-24 1jx6A 342 1.67e-23 c.93.1.1 67406 1bykA 255 2.39e-23 c.93.1.1 35706 2fn9A 290 3.27e-23 3clkA 290 3.96e-23 2dri 271 7.04e-23 2fvyA 309 3.99e-22 c.93.1.1 134227 3brsA 289 7.99e-22 1tjyA 316 1.08e-21 c.93.1.1 107062 3d02A 303 1.48e-21 8abp 306 2.87e-21 1gca 309 3.26e-21 2rjoA 332 3.27e-21 2qvcA 313 6.62e-21 2h3hA 313 7.57e-21 8abpA 306 1.66e-20 c.93.1.1 35647 3c6qA 311 5.91e-20 2qh8A 302 6.75e-20 1gudA 288 1.00e-19 c.93.1.1 83326 2fqxA 318 3.54e-18 2hqbA 296 3.10e-16 2bjcA 62 4.01e-08 a.35.1.5 128620 1cjgA 62 8.64e-08 a.35.1.5 17112 3ckmA 327 0.004022 2h4aA 325 0.006805 1usgA 346 0.01641 c.93.1.1 99864 1z15A 344 0.02183 1peaA 385 0.02956 c.93.1.1 35662 2liv 344 0.04199 1zxxA 319 0.05256 2pfkA 320 0.1224 c.89.1.1 35577 2e4uA 555 0.1264 1ewkA 490 0.2207 c.93.1.1 35712 1jdpA 441 0.4090 c.93.1.1 62906 1pfkA 320 0.7568 c.89.1.1 35575 1pea 385 0.8035 1dp4A 435 0.8552 c.93.1.1 35710 1vljA 407 2.987 e.22.1.2 108832 1wd7A 261 3.659 c.113.1.1 114526 2ebyA 113 5.716 3cecA 104 6.246 1wcwA 261 6.648 2qq9A 226 6.743 2i33A 258 7.444 2bdtA 189 7.480 c.37.1.25 128344 1fx7A 230 7.816 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2b5aA 77 7.988 a.35.1.3 127882 1y9qA 192 8.269 a.35.1.8,b.82.1.15 116592,116593 1rvv1 154 8.711 1uqrA 154 8.964 c.23.13.1 99779 1geqA 248 10.14 c.1.2.4 28589 1q6oA 216 10.31 c.1.2.3 95986 1ukz 203 10.42 2ictA 94 10.98 2c4wA 176 11.46 2hmcA 344 11.58 2nu8B 388 11.80 2yv1A 294 12.21 2hlkA 255 13.06 1zejA 293 13.61 2obxA 157 14.23 2yx0A 342 15.64 1o5kA 306 15.75 c.1.10.1 92504 1hqkA 154 16.60 c.16.1.1 65902 1w3iA 293 17.48 c.1.10.1 109152 1s2oA 244 17.63 c.108.1.10 118846 1vb3A 428 17.70 c.79.1.1 119942 2h09A 155 18.30 1utxA 66 19.21 a.35.1.3 108034 2iw0A 254 19.25 c.6.2.3 137737 1hlvA 131 19.91 a.4.1.7,a.4.1.7 65854,65855 3bs3A 76 20.53 1on2A 142 20.69 a.4.5.24,a.76.1.1 87103,87104 2fp4B 395 22.25 c.23.4.1,d.142.1.4 133897,133898 2v9dA 343 23.58 1t33A 224 25.69 a.4.1.9,a.121.1.1 106295,106296 1y7yA 74 26.38 a.35.1.3 122729 3bdiA 207 28.20 1adrA 76 28.23 a.35.1.2 17042 1xi3A 215 28.28 c.1.3.1 109601 1z77A 200 28.65 a.4.1.9,a.121.1.1 124588,124589 2bnmA 198 28.85 a.35.1.3,b.82.1.10 128835,128836 1rktA 205 29.10 a.4.1.9,a.121.1.1 97623,97624 1nsjA 205 29.90 c.1.2.4 28560 2hxoA 237 30.21 1pb6A 212 30.80 a.4.1.9,a.121.1.1 88017,88018 1gtzA 156 32.09 c.23.13.1 70539 1sfxA 109 32.72 a.4.5.50 105505 2ekcA 262 32.84 1tv8A 340 33.01 c.1.28.3 107352 2r1jL 68 33.48 2qddA 378 33.95 2i0fA 157 34.17 1scuA 288 35.29 c.2.1.8,c.23.4.1 30307,31135 2rfgA 297 36.01 3c2qA 345 36.15 1vd6A 224 36.25 c.1.18.3 119991 1lsuA 147 36.96 c.2.1.9 74250 1zccA 248 37.02 c.1.18.3 124903 1tcvA 287 37.24 1v7bA 185 38.84 a.4.1.9,a.121.1.1 119861,119862 2d2jA 329 39.27 c.1.9.3 131175 1d0iA 156 39.28 c.23.13.1 31383 1gz0A 253 39.52 c.116.1.1,d.79.3.3 76391,76392 3ch0A 272 39.88 1b0nA 111 40.18 a.34.1.1,a.35.1.3 17001,17064 1hl2A 297 40.29 c.1.10.1 83581 1zk8A 183 40.36 a.4.1.9,a.121.1.1 125177,125178 1knqA 175 40.53 c.37.1.17 72786 3b7hA 78 40.84 1vz0A 230 40.94 a.4.14.1,d.268.1.1 108929,108930 1pwhA 327 41.20 c.79.1.1 95224 2j5bA 348 41.77 2nzxA 371 41.81 2oogA 287 42.01 2qcoA 210 42.35 1l9xA 315 42.91 c.23.16.1 73762 1imjA 210 43.20 c.69.1.23 71246 1dhpA 292 43.79 c.1.10.1 29097 1ui5A 215 44.82 a.4.1.9,a.121.1.1 107856,107857 2g0wA 296 45.00 c.1.15.4 134503 2c92A 160 45.20 1igs 248 46.07 2bdqA 224 46.61 1owlA 484 47.35 a.99.1.1,c.28.1.1 93647,93648 2higA 487 47.54 2r7aA 256 48.01 2dtr 226 48.02 1tezA 474 48.81 a.99.1.1,c.28.1.1 112409,112410 2gruA 368 49.53 1dnpA 471 49.77 a.99.1.1,c.28.1.1 18775,31630 1fkx 349 50.01 1z5oA 242 50.84 1sgmA 191 52.37 a.4.1.9,a.121.1.1 105537,105538 2ehhA 294 52.77 2ojpA 292 53.16 1u3eM 174 53.17 d.4.1.3,d.285.1.1 107640,107641 1mkyA 439 53.23 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2bleA 367 53.73 1vi0A 206 53.86 a.4.1.9,a.121.1.1 100720,100721 2dtrA 226 53.88 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2id6A 202 54.20 1eudB 396 55.50 c.23.4.1,d.142.1.4 31150,41571 2qibA 231 57.84 1u5hA 273 58.27 c.1.12.5 113037 1wstA 417 58.54 c.67.1.1 121244 2o7tA 199 58.64 2aumA 317 58.65 c.8.10.1,c.23.16.7 127330,127331 2d1hA 109 58.68 a.4.5.50 131125 2qwtA 196 59.03 3d0cA 314 59.12 1ejbA 168 59.13 c.16.1.1 59417 3c9uA 342 59.34 1a53 247 59.81 2igpA 120 61.68 1nal1 297 62.48 2a6lA 292 63.01 c.1.10.1 126285 1r1uA 106 63.74 a.4.5.5 104771 1z91A 147 64.60 a.4.5.28 124736 1r88A 280 65.81 c.69.1.3 97219 1qpoA 284 65.89 c.1.17.1,d.41.2.1 29561,38597 1qvtA 194 65.98 a.4.1.9,a.121.1.1 104602,104603 2qzjA 136 66.01 1ulyA 192 67.56 a.4.5.58 113297 2dg8A 193 69.38 1n4aA 252 69.38 c.92.2.2 85317 1z5nA 242 69.83 1xbyA 216 69.95 c.1.2.3 121846 2fd5A 180 70.92 a.4.1.9,a.121.1.1 133291,133292 2oi8A 216 71.75 1h05A 146 71.94 c.23.13.1 76433 2r91A 286 72.92 1u2wA 122 73.09 a.4.5.5 119487 1qopA 268 73.45 c.1.2.4 28570 1zkgA 212 73.64 a.4.1.9,a.121.1.1 125194,125195 2raeA 207 74.06 2iu5A 195 74.41 2o3fA 111 74.78 2jfuA 291 75.25 2cro 71 75.30 2r8wA 332 75.69 1zp4A 304 75.82 1jt6A 188 76.27 a.4.1.9,a.121.1.1 67247,67248 3bhqA 211 76.40 1y7pA 223 76.81 c.23.1.7,d.58.18.12 122708,122709 2rekA 199 77.43 2dztA 248 77.70 2nx4A 194 79.50 2hytA 197 79.97 1vh7A 265 80.13 c.1.2.1 100646 2purA 292 80.72 1zh2A 121 80.72 c.23.1.1 125069 1qnf 484 81.40 1vbjA 281 81.96 1x7oA 287 82.37 1ojxA 263 83.36 c.1.10.1 93164 2ev0A 142 83.97 a.4.5.24,a.76.1.1 132413,132414 3c86A 328 85.78 1jhgA 101 86.93 a.4.12.1 19009 2f07A 197 86.93 2rb9A 334 88.48 1p5jA 372 88.53 c.79.1.1 104067 3cwrA 208 88.64 1lnwA 147 88.81 a.4.5.28 78104 1r69A 69 89.49 a.35.1.2 17028 2a6nA 292 90.00 c.1.10.1 126289