# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 8.09e-31 a.35.1.5,c.93.1.1 66652,66653 2o20A 332 3.77e-26 2rgyA 290 4.02e-26 3bblA 287 4.26e-26 2fepA 289 5.46e-26 3brqA 296 1.09e-25 3ctpA 330 1.25e-25 3c3kA 285 1.55e-25 2iksA 293 2.20e-25 3bilA 348 5.65e-25 2qu7A 288 6.24e-25 3cs3A 277 3.38e-24 1jyeA 349 5.34e-24 c.93.1.1 67455 1dbqA 289 1.45e-23 c.93.1.1 35666 1tlfA 301 1.54e-23 c.93.1.1 35687 2ioyA 283 8.00e-23 2driA 271 1.29e-22 c.93.1.1 35637 1bykA 255 5.99e-22 c.93.1.1 35706 3clkA 290 7.18e-22 2dri 271 1.07e-21 1jx6A 342 1.35e-21 c.93.1.1 67406 2h0aA 276 2.25e-21 2fn9A 290 2.50e-21 2fvyA 309 8.78e-21 c.93.1.1 134227 2rjoA 332 1.13e-20 3brsA 289 1.44e-20 1tjyA 316 2.14e-20 c.93.1.1 107062 3d02A 303 2.24e-20 8abp 306 3.31e-20 1gca 309 7.37e-20 2qvcA 313 1.09e-19 8abpA 306 1.38e-19 c.93.1.1 35647 2h3hA 313 1.54e-19 3c6qA 311 4.00e-19 1gudA 288 7.59e-19 c.93.1.1 83326 2qh8A 302 8.86e-19 2fqxA 318 9.32e-17 2hqbA 296 9.42e-15 2bjcA 62 9.08e-08 a.35.1.5 128620 1cjgA 62 1.64e-07 a.35.1.5 17112 2h4aA 325 0.01159 3ckmA 327 0.01837 1peaA 385 0.04508 c.93.1.1 35662 1zxxA 319 0.04884 1z15A 344 0.06260 1usgA 346 0.08932 c.93.1.1 99864 2e4uA 555 0.2867 1jdpA 441 0.3356 c.93.1.1 62906 2pfkA 320 0.5330 c.89.1.1 35577 2liv 344 0.6617 1ewkA 490 0.8728 c.93.1.1 35712 1dp4A 435 1.194 c.93.1.1 35710 2hmcA 344 1.432 1pfkA 320 3.861 c.89.1.1 35575 1vljA 407 3.962 e.22.1.2 108832 1wd7A 261 5.669 c.113.1.1 114526 2nu8B 388 5.674 2i33A 258 5.863 1wcwA 261 6.315 2qq9A 226 6.356 2ebyA 113 6.405 2hlkA 255 7.454 2bdtA 189 9.536 c.37.1.25 128344 1mdl 359 9.800 1uqrA 154 10.78 c.23.13.1 99779 3cecA 104 10.81 1rvv1 154 10.92 2b5aA 77 11.17 a.35.1.3 127882 2fp4B 395 11.37 c.23.4.1,d.142.1.4 133897,133898 1y7yA 74 12.80 a.35.1.3 122729 1y9qA 192 13.09 a.35.1.8,b.82.1.15 116592,116593 2ictA 94 13.84 2obxA 157 14.31 1o5kA 306 14.73 c.1.10.1 92504 3bs3A 76 16.83 1pea 385 18.00 2c4wA 176 18.18 1scuA 288 19.28 c.2.1.8,c.23.4.1 30307,31135 1vb3A 428 19.33 c.79.1.1 119942 1utxA 66 19.48 a.35.1.3 108034 1nsjA 205 19.64 c.1.2.4 28560 1xi3A 215 19.66 c.1.3.1 109601 2j5bA 348 20.07 2h09A 155 20.90 1fx7A 230 21.38 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2v9dA 343 22.23 2r1jL 68 22.24 1mucA 373 22.85 c.1.11.2,d.54.1.1 29236,38880 2bnmA 198 25.56 a.35.1.3,b.82.1.10 128835,128836 2rfgA 297 25.81 2r91A 286 26.09 1d0iA 156 26.28 c.23.13.1 31383 1gtzA 156 27.66 c.23.13.1 70539 1hqkA 154 28.05 c.16.1.1 65902 1twdA 256 28.37 c.1.30.1 107397 1mkyA 439 29.00 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1mdlA 359 30.20 c.1.11.2,d.54.1.1 29247,38891 1jflA 228 30.72 c.78.2.1,c.78.2.1 71656,71657 1on2A 142 30.73 a.4.5.24,a.76.1.1 87103,87104 1b0nA 111 33.36 a.34.1.1,a.35.1.3 17001,17064 2bdqA 224 33.40 1rrmA 386 34.03 e.22.1.2 105081 1w3iA 293 34.55 c.1.10.1 109152 1q6oA 216 34.98 c.1.2.3 95986 2btuA 346 35.66 1ukz 203 37.04 1pwhA 327 37.08 c.79.1.1 95224 1q9uA 130 37.38 d.129.7.1 96314 2yv1A 294 37.79 1adrA 76 39.31 a.35.1.2 17042 1g67A 225 39.55 c.1.3.1 60311 2o3fA 111 40.09 2hxoA 237 40.40 2c4nA 250 40.56 c.108.1.14 129837 2dtrA 226 41.17 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1hlvA 131 41.32 a.4.1.7,a.4.1.7 65854,65855 1xkyA 301 41.90 c.1.10.1 122094 1hl2A 297 42.00 c.1.10.1 83581 1zccA 248 42.00 c.1.18.3 124903 2higA 487 42.31 3bdiA 207 42.31 1z77A 200 42.60 a.4.1.9,a.121.1.1 124588,124589 1owlA 484 42.83 a.99.1.1,c.28.1.1 93647,93648 2dgdA 223 42.86 2ehhA 294 43.85 1tkkA 366 44.30 c.1.11.2,d.54.1.1 107089,107090 2ax4A 198 44.48 1zejA 293 44.78 1ta9A 450 45.61 1vliA 385 45.79 b.85.1.1,c.1.10.6 108830,108831 1ojxA 263 46.96 c.1.10.1 93164 1imjA 210 47.30 c.69.1.23 71246 1u3eM 174 47.39 d.4.1.3,d.285.1.1 107640,107641 1h05A 146 47.79 c.23.13.1 76433 1geqA 248 47.83 c.1.2.4 28589 1sfxA 109 48.30 a.4.5.50 105505 2i0fA 157 48.33 2oq2A 261 49.04 1v5xA 203 50.01 c.1.2.4 100377 3d0cA 314 50.11 3b4uA 294 50.26 3b7hA 78 50.43 1wkaA 147 50.76 b.51.1.1 120978 1r88A 280 51.02 c.69.1.3 97219 2qzjA 136 51.25 2a6lA 292 52.51 c.1.10.1 126285 1w8sA 263 52.77 c.1.10.1 120744 2d1hA 109 53.81 a.4.5.50 131125 1t13A 158 54.42 2qddA 378 55.97 2oo6A 409 56.32 2igpA 120 56.39 1dnpA 471 57.14 a.99.1.1,c.28.1.1 18775,31630 1amp 291 59.51 2r7aA 256 59.65 1c4oA 664 60.30 c.37.1.19,c.37.1.19 32415,32416 3c2qA 345 60.41 1eudB 396 60.46 c.23.4.1,d.142.1.4 31150,41571 3c9uA 342 60.47 2d2jA 329 60.56 c.1.9.3 131175 2dtr 226 60.77 1di0A 158 60.86 c.16.1.1 30957 1tezA 474 61.90 a.99.1.1,c.28.1.1 112409,112410 2a9oA 120 62.69 c.23.1.1 126444 1gz0A 253 63.19 c.116.1.1,d.79.3.3 76391,76392 1dhpA 292 63.37 c.1.10.1 29097 1ulyA 192 64.32 a.4.5.58 113297 2fliA 220 65.16 c.1.2.2 133714 2og9A 393 65.36 1nal1 297 66.18 2r8wA 332 66.48 4ts1A 319 66.77 c.26.1.1 31565 1t33A 224 66.89 a.4.1.9,a.121.1.1 106295,106296 2zayA 147 67.07 2ojpA 292 67.22 1wstA 417 67.70 c.67.1.1 121244 1zfjA 491 67.73 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 2pmqA 377 67.90 2dhqA 146 68.44 c.23.13.1 31382 2yx0A 342 69.05 1yt8A 539 69.22 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2gruA 368 69.31 2cyaA 364 70.09 2pp3A 398 71.69 2a6nA 292 71.91 c.1.10.1 126289 1wk8A 194 72.43 2cycA 375 72.48 1vz0A 230 72.83 a.4.14.1,d.268.1.1 108929,108930 1n7hA 381 73.26 c.2.1.2 80250 2purA 292 74.06 2v9yA 334 74.31 1l9xA 315 75.70 c.23.16.1 73762 2rdxA 379 75.96 2nzxA 371 76.62 1vbjA 281 76.64 2i6jA 161 76.80 2aumA 317 78.20 c.8.10.1,c.23.16.7 127330,127331 1r69A 69 78.23 a.35.1.2 17028 1n4aA 252 80.71 c.92.2.2 85317 1tv8A 340 82.06 c.1.28.3 107352 2gdqA 382 83.28 c.1.11.2,d.54.1.1 135020,135021 1zh2A 121 83.98 c.23.1.1 125069 2z1eA 342 84.11 2id6A 202 84.27 2nuwA 288 84.36 2oogA 287 84.46 1ejbA 168 84.76 c.16.1.1 59417 1z91A 147 85.64 a.4.5.28 124736 1byiA 224 86.19 c.37.1.10 32199 1wnyA 186 86.53 2ovlA 371 87.36 1dxeA 256 88.31 c.1.12.5 29310 1qnf 484 89.20 2cro 71 89.75