# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 2.05e-24 a.35.1.5,c.93.1.1 66652,66653 3bblA 287 1.36e-21 2rgyA 290 3.53e-21 3c3kA 285 5.06e-21 2fepA 289 1.09e-20 2o20A 332 1.82e-20 3ctpA 330 2.02e-20 3brqA 296 2.54e-20 2iksA 293 3.58e-20 3bilA 348 6.90e-20 2qu7A 288 1.15e-19 1dbqA 289 4.13e-19 c.93.1.1 35666 3cs3A 277 5.45e-19 1jyeA 349 5.76e-19 c.93.1.1 67455 1tlfA 301 1.36e-18 c.93.1.1 35687 2ioyA 283 5.38e-18 2driA 271 8.62e-18 c.93.1.1 35637 2h0aA 276 9.25e-18 1jx6A 342 2.67e-17 c.93.1.1 67406 1bykA 255 2.90e-17 c.93.1.1 35706 2fn9A 290 3.19e-17 3clkA 290 4.11e-17 2dri 271 4.47e-17 3brsA 289 1.60e-16 2rjoA 332 1.75e-16 1tjyA 316 2.05e-16 c.93.1.1 107062 2fvyA 309 3.46e-16 c.93.1.1 134227 3d02A 303 3.76e-16 8abp 306 3.77e-16 8abpA 306 1.20e-15 c.93.1.1 35647 1gca 309 1.42e-15 2qvcA 313 1.82e-15 2h3hA 313 2.46e-15 2qh8A 302 2.85e-15 3c6qA 311 5.72e-15 1gudA 288 6.52e-15 c.93.1.1 83326 2fqxA 318 2.61e-13 2hqbA 296 1.95e-11 2bjcA 62 1.17e-05 a.35.1.5 128620 1cjgA 62 1.99e-05 a.35.1.5 17112 2liv 344 0.06981 1zxxA 319 0.09421 1peaA 385 0.09625 c.93.1.1 35662 1usgA 346 0.1146 c.93.1.1 99864 3ckmA 327 0.1924 1z15A 344 0.4278 2h4aA 325 0.9033 2pfkA 320 0.998 c.89.1.1 35577 1jdpA 441 1.284 c.93.1.1 62906 2e4uA 555 1.764 1pfkA 320 2.353 c.89.1.1 35575 1dp4A 435 2.531 c.93.1.1 35710 2hmcA 344 2.746 1pea 385 3.162 2rfgA 297 5.764 1wd7A 261 5.956 c.113.1.1 114526 2bsxA 253 7.057 c.56.2.1 129128 1ewkA 490 7.397 c.93.1.1 35712 2aumA 317 8.335 c.8.10.1,c.23.16.7 127330,127331 2v1xA 591 10.18 2aunA 317 10.77 c.8.10.1,c.23.16.7 127334,127335 1wcwA 261 10.81 2i33A 258 12.48 2bdqA 224 13.00 2nuwA 288 14.49 2a6lA 292 15.21 c.1.10.1 126285 2higA 487 15.38 2hlkA 255 16.91 2a6nA 292 17.39 c.1.10.1 126289 2rdxA 379 17.48 2ojpA 292 19.03 1qw9A 502 19.47 b.71.1.2,c.1.8.3 96466,96467 2obxA 157 19.56 2nu8B 388 20.15 1uqrA 154 20.16 c.23.13.1 99779 1rvv1 154 20.59 1o5kA 306 20.64 c.1.10.1 92504 1t13A 158 21.81 2g0wA 296 21.97 c.1.15.4 134503 1nsjA 205 23.47 c.1.2.4 28560 1rrmA 386 23.71 e.22.1.2 105081 1xkyA 301 24.08 c.1.10.1 122094 1zrsA 317 25.30 c.8.10.1,c.23.16.7 125556,125557 3cecA 104 26.77 2ebyA 113 27.14 2j5bA 348 27.44 1tkkA 366 27.52 c.1.11.2,d.54.1.1 107089,107090 2bdtA 189 27.62 c.37.1.25 128344 1geqA 248 28.44 c.1.2.4 28589 2eq5A 228 29.73 2ax4A 198 29.85 1ukz 203 30.38 2qddA 378 30.50 2c4wA 176 30.62 1o66A 275 30.96 c.1.12.8 92547 2b5aA 77 31.48 a.35.1.3 127882 1hqkA 154 32.57 c.16.1.1 65902 1xi3A 215 33.31 c.1.3.1 109601 1fx7A 230 33.50 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2r8wA 332 33.95 1yhtA 367 34.48 c.1.8.6 123213 2vlbA 251 34.96 2ovlA 371 35.12 1y7yA 74 35.54 a.35.1.3 122729 2pmqA 377 35.63 2oqhA 385 35.76 1j32A 388 36.56 c.67.1.1 77067 2v9dA 343 36.62 1mkyA 439 37.06 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1vbjA 281 37.79 2og9A 393 37.90 2ictA 94 38.07 2pp3A 398 38.79 3c86A 328 40.24 1ho1A 242 40.30 c.1.24.1 61097 3bs3A 76 40.59 2gjlA 328 41.70 2i0fA 157 42.39 1a53 247 42.54 1mdl 359 42.80 1q6oA 216 43.12 c.1.2.3 95986 2r91A 286 43.53 1jflA 228 43.68 c.78.2.1,c.78.2.1 71656,71657 1zejA 293 43.72 1b0aA 288 44.08 c.2.1.7,c.58.1.2 30286,33934 1d0iA 156 44.44 c.23.13.1 31383 2d2jA 329 44.68 c.1.9.3 131175 1gtzA 156 45.40 c.23.13.1 70539 1utxA 66 45.68 a.35.1.3 108034 1ojxA 263 47.94 c.1.10.1 93164 2dtrA 226 48.55 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2r1jL 68 48.72 2qm8A 337 49.38 1euaA 213 50.27 c.1.10.1 29155 2qq9A 226 52.26 1ivnA 190 52.71 c.23.10.5 83719 1ur3M 319 53.87 c.1.7.1 99806 1w8sA 263 53.90 c.1.10.1 120744 2ehhA 294 54.97 1w3iA 293 55.36 c.1.10.1 109152 3c2bA 221 55.99 1nal1 297 57.11 1ecpA 238 57.40 c.56.2.1 33775 2dgdA 223 57.68 2a67A 167 58.36 1twdA 256 58.37 c.1.30.1 107397 1fcjA 322 58.47 c.79.1.1 35289 2bnmA 198 58.82 a.35.1.3,b.82.1.10 128835,128836 1tv8A 340 59.34 c.1.28.3 107352 1dhpA 292 60.05 c.1.10.1 29097 1y9qA 192 60.43 a.35.1.8,b.82.1.15 116592,116593 2nzxA 371 60.67 1hl2A 297 60.72 c.1.10.1 83581 2z06A 252 61.35 1t56A 216 61.86 a.4.1.9,a.121.1.1 106428,106429 2yv1A 294 62.37 1hlvA 131 62.99 a.4.1.7,a.4.1.7 65854,65855 1amp 291 63.44 1z77A 200 64.23 a.4.1.9,a.121.1.1 124588,124589 2i6uA 307 64.31 1on2A 142 64.36 a.4.5.24,a.76.1.1 87103,87104 1zl0A 311 65.27 c.8.10.1,c.23.16.7 125231,125232 2zayA 147 66.47 3bdiA 207 67.27 1pwhA 327 67.48 c.79.1.1 95224 1yadA 221 67.59 1vljA 407 67.80 e.22.1.2 108832 1gz0A 253 67.98 c.116.1.1,d.79.3.3 76391,76392 1sr9A 644 68.13 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 2yx0A 342 68.46 2i5gA 325 68.98 3c9uA 342 69.10 1z91A 147 72.25 a.4.5.28 124736 1lsuA 147 72.35 c.2.1.9 74250 1p5jA 372 73.73 c.79.1.1 104067 3b4uA 294 74.89 1k6wA 426 74.96 b.92.1.2,c.1.9.5 68236,68237 1adrA 76 77.74 a.35.1.2 17042 1h05A 146 78.72 c.23.13.1 76433 2fliA 220 80.11 c.1.2.2 133714 2og2A 359 80.82 1sfxA 109 81.07 a.4.5.50 105505 1vi2A 300 81.14 c.2.1.7,c.58.1.5 100726,100727 1jysA 242 81.67 c.56.2.1 77216 3d0cA 314 83.59 1zcjA 463 84.28 2fbqA 235 84.75 a.4.1.9,a.121.1.1 133256,133257 1b0nA 111 85.43 a.34.1.1,a.35.1.3 17001,17064 1fkx 349 87.22 1i60A 278 89.01 c.1.15.4 71118 1hnjA 317 89.43 c.95.1.2,c.95.1.2 35969,35970 2gzmA 267 89.76