# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 9.81e-31 a.35.1.5,c.93.1.1 66652,66653 2rgyA 290 3.45e-26 2o20A 332 4.43e-26 2fepA 289 4.88e-26 3bblA 287 5.43e-26 3brqA 296 8.48e-26 3c3kA 285 1.05e-25 3ctpA 330 1.44e-25 2iksA 293 1.68e-25 2qu7A 288 5.14e-25 3bilA 348 5.23e-25 3cs3A 277 3.45e-24 1jyeA 349 4.52e-24 c.93.1.1 67455 1dbqA 289 1.32e-23 c.93.1.1 35666 1tlfA 301 1.67e-23 c.93.1.1 35687 2ioyA 283 8.46e-23 2driA 271 1.24e-22 c.93.1.1 35637 3clkA 290 6.93e-22 1bykA 255 7.22e-22 c.93.1.1 35706 1jx6A 342 9.12e-22 c.93.1.1 67406 2dri 271 9.56e-22 2fn9A 290 1.81e-21 2h0aA 276 2.04e-21 2fvyA 309 1.09e-20 c.93.1.1 134227 2rjoA 332 1.37e-20 1tjyA 316 1.50e-20 c.93.1.1 107062 3brsA 289 1.58e-20 3d02A 303 2.56e-20 8abp 306 3.18e-20 1gca 309 8.76e-20 2qvcA 313 9.66e-20 8abpA 306 1.25e-19 c.93.1.1 35647 2h3hA 313 1.37e-19 3c6qA 311 3.72e-19 1gudA 288 6.33e-19 c.93.1.1 83326 2qh8A 302 8.71e-19 2fqxA 318 8.55e-17 2hqbA 296 7.84e-15 2bjcA 62 1.04e-07 a.35.1.5 128620 1cjgA 62 1.84e-07 a.35.1.5 17112 2h4aA 325 0.01010 3ckmA 327 0.01605 1zxxA 319 0.04862 1peaA 385 0.06008 c.93.1.1 35662 1z15A 344 0.08377 1usgA 346 0.09351 c.93.1.1 99864 1jdpA 441 0.2670 c.93.1.1 62906 2e4uA 555 0.3445 1ewkA 490 0.6554 c.93.1.1 35712 2pfkA 320 0.7254 c.89.1.1 35577 2liv 344 0.9697 1dp4A 435 1.029 c.93.1.1 35710 2hmcA 344 1.594 1vljA 407 4.379 e.22.1.2 108832 2qq9A 226 6.034 1uqrA 154 6.897 c.23.13.1 99779 2hlkA 255 7.019 1pfkA 320 7.091 c.89.1.1 35575 1mdl 359 7.495 2i33A 258 7.780 2bdtA 189 7.816 c.37.1.25 128344 1wd7A 261 8.202 c.113.1.1 114526 2ebyA 113 8.254 1wcwA 261 8.381 1o5kA 306 9.441 c.1.10.1 92504 1nsjA 205 11.91 c.1.2.4 28560 3cecA 104 11.99 1y9qA 192 12.28 a.35.1.8,b.82.1.15 116592,116593 2nu8B 388 12.73 2obxA 157 12.95 1rvv1 154 14.08 2b5aA 77 14.75 a.35.1.3 127882 2ictA 94 14.77 2c4wA 176 14.92 1d0iA 156 15.68 c.23.13.1 31383 2v9dA 343 16.02 1gtzA 156 16.57 c.23.13.1 70539 3bs3A 76 17.20 1y7yA 74 17.99 a.35.1.3 122729 2bdqA 224 18.10 1xi3A 215 20.17 c.1.3.1 109601 1q6oA 216 20.30 c.1.2.3 95986 2rfgA 297 21.29 2h09A 155 21.54 1fx7A 230 21.64 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1twdA 256 21.99 c.1.30.1 107397 1ukz 203 22.23 2r91A 286 22.96 2j5bA 348 23.91 2r1jL 68 23.99 2bnmA 198 24.45 a.35.1.3,b.82.1.10 128835,128836 2d2jA 329 24.68 c.1.9.3 131175 1mkyA 439 24.73 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1pea 385 24.95 1zejA 293 25.18 1utxA 66 25.75 a.35.1.3 108034 2fp4B 395 27.12 c.23.4.1,d.142.1.4 133897,133898 1scuA 288 27.48 c.2.1.8,c.23.4.1 30307,31135 1hl2A 297 28.87 c.1.10.1 83581 1w3iA 293 28.94 c.1.10.1 109152 1mucA 373 31.69 c.1.11.2,d.54.1.1 29236,38880 1w8sA 263 31.73 c.1.10.1 120744 1xkyA 301 32.77 c.1.10.1 122094 1mdlA 359 33.34 c.1.11.2,d.54.1.1 29247,38891 1ojxA 263 33.57 c.1.10.1 93164 1rrmA 386 33.61 e.22.1.2 105081 2dtr 226 34.05 1h05A 146 34.32 c.23.13.1 76433 1on2A 142 34.42 a.4.5.24,a.76.1.1 87103,87104 2ax4A 198 34.66 1b0nA 111 35.02 a.34.1.1,a.35.1.3 17001,17064 2ehhA 294 35.02 3b4uA 294 35.17 1jflA 228 36.15 c.78.2.1,c.78.2.1 71656,71657 3bdiA 207 36.79 1vliA 385 37.40 b.85.1.1,c.1.10.6 108830,108831 1v5xA 203 37.51 c.1.2.4 100377 2hxoA 237 38.40 2aumA 317 38.87 c.8.10.1,c.23.16.7 127330,127331 2o3fA 111 40.46 1ta9A 450 41.49 1tv8A 340 42.04 c.1.28.3 107352 1hlvA 131 42.05 a.4.1.7,a.4.1.7 65854,65855 2dtrA 226 42.46 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2higA 487 42.76 1dhpA 292 43.23 c.1.10.1 29097 1zccA 248 43.40 c.1.18.3 124903 1adrA 76 44.54 a.35.1.2 17042 1tkkA 366 44.63 c.1.11.2,d.54.1.1 107089,107090 2a6lA 292 44.75 c.1.10.1 126285 1u3eM 174 44.86 d.4.1.3,d.285.1.1 107640,107641 1z77A 200 44.94 a.4.1.9,a.121.1.1 124588,124589 1wstA 417 45.02 c.67.1.1 121244 3c2qA 345 46.73 2nzxA 371 46.99 1geqA 248 47.45 c.1.2.4 28589 1q9uA 130 48.04 d.129.7.1 96314 2purA 292 48.20 1vb3A 428 48.28 c.79.1.1 119942 1dnpA 471 48.44 a.99.1.1,c.28.1.1 18775,31630 2igpA 120 48.56 1z91A 147 49.39 a.4.5.28 124736 1owlA 484 50.14 a.99.1.1,c.28.1.1 93647,93648 2qzjA 136 50.14 1nal1 297 50.60 3b7hA 78 51.33 2ojpA 292 51.53 2dgdA 223 51.60 1wkaA 147 52.24 b.51.1.1 120978 1gz0A 253 53.24 c.116.1.1,d.79.3.3 76391,76392 2d1hA 109 53.40 a.4.5.50 131125 2dhqA 146 53.99 c.23.13.1 31382 2qddA 378 54.38 2a6nA 292 54.76 c.1.10.1 126289 2r8wA 332 54.96 2zayA 147 55.10 1wk8A 194 56.41 3c86A 328 56.70 1t13A 158 58.01 1hqkA 154 58.56 c.16.1.1 65902 2c4nA 250 59.39 c.108.1.14 129837 2r7aA 256 59.49 1dxeA 256 60.00 c.1.12.5 29310 1yt8A 539 60.60 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2oo6A 409 61.20 2og9A 393 61.29 2btuA 346 61.73 1sfxA 109 61.98 a.4.5.50 105505 1n7hA 381 62.15 c.2.1.2 80250 3d0cA 314 62.16 1vbjA 281 63.13 1ulyA 192 63.40 a.4.5.58 113297 1jq5A 370 63.63 e.22.1.2 67084 1pwhA 327 64.53 c.79.1.1 95224 2oogA 287 64.69 2yx0A 342 64.70 2pmqA 377 64.87 1o66A 275 65.23 c.1.12.8 92547 1di0A 158 65.74 c.16.1.1 30957 1tezA 474 66.58 a.99.1.1,c.28.1.1 112409,112410 1wnyA 186 67.35 1imjA 210 68.43 c.69.1.23 71246 1tcvA 287 70.54 2i6jA 161 71.56 1t33A 224 71.95 a.4.1.9,a.121.1.1 106295,106296 2a9oA 120 72.59 c.23.1.1 126444 2aunA 317 72.91 c.8.10.1,c.23.16.7 127334,127335 1byiA 224 75.39 c.37.1.10 32199 2yv1A 294 76.17 2ovlA 371 76.78 2i0fA 157 78.31 2gruA 368 78.41 2nuwA 288 78.49 1xm3A 264 81.31 c.1.31.1 115461 1zl0A 311 82.54 c.8.10.1,c.23.16.7 125231,125232 1vz0A 230 82.87 a.4.14.1,d.268.1.1 108929,108930 1o4uA 285 83.83 c.1.17.1,d.41.2.1 86624,86625 4ts1A 319 84.06 c.26.1.1 31565 2pp3A 398 84.41 1u5hA 273 84.43 c.1.12.5 113037 2rdxA 379 87.45 1qpoA 284 87.71 c.1.17.1,d.41.2.1 29561,38597 2nq5A 755 88.11 2fbiA 142 88.50 a.4.5.28 133246 1b5tA 275 89.97 c.1.23.1 29676