# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 2.75e-35 a.35.1.5,c.93.1.1 66652,66653 2rgyA 290 3.10e-30 2fepA 289 4.08e-30 3bblA 287 6.09e-30 2iksA 293 6.50e-30 3c3kA 285 7.58e-30 2o20A 332 1.02e-29 3brqA 296 1.20e-29 3ctpA 330 6.14e-29 3bilA 348 1.29e-28 2qu7A 288 1.48e-28 3cs3A 277 4.08e-28 1dbqA 289 1.70e-27 c.93.1.1 35666 3clkA 290 6.18e-27 1jyeA 349 7.48e-27 c.93.1.1 67455 1tlfA 301 1.29e-26 c.93.1.1 35687 2ioyA 283 7.71e-26 2h0aA 276 1.17e-25 2driA 271 1.83e-25 c.93.1.1 35637 1jx6A 342 3.29e-25 c.93.1.1 67406 1bykA 255 6.83e-25 c.93.1.1 35706 2fn9A 290 8.15e-25 2dri 271 1.86e-24 3brsA 289 2.55e-23 2fvyA 309 3.26e-23 c.93.1.1 134227 1tjyA 316 5.96e-23 c.93.1.1 107062 2rjoA 332 6.12e-23 8abp 306 1.66e-22 1gca 309 1.84e-22 3d02A 303 2.10e-22 2h3hA 313 3.87e-22 2qvcA 313 4.87e-22 8abpA 306 1.20e-21 c.93.1.1 35647 2qh8A 302 2.86e-21 1gudA 288 4.96e-21 c.93.1.1 83326 3c6qA 311 5.45e-21 2fqxA 318 6.42e-19 2hqbA 296 2.96e-16 1cjgA 62 2.15e-08 a.35.1.5 17112 2bjcA 62 2.28e-08 a.35.1.5 128620 2h4aA 325 0.003346 3ckmA 327 0.004375 1peaA 385 0.01152 c.93.1.1 35662 1z15A 344 0.1212 1usgA 346 0.1463 c.93.1.1 99864 2liv 344 0.3857 1zxxA 319 0.4495 2e4uA 555 1.080 1ewkA 490 1.258 c.93.1.1 35712 1jdpA 441 1.494 c.93.1.1 62906 1dp4A 435 1.928 c.93.1.1 35710 2pfkA 320 2.371 c.89.1.1 35577 2i33A 258 6.658 2c4wA 176 6.924 1vljA 407 10.40 e.22.1.2 108832 1fx7A 230 10.46 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 3cecA 104 11.25 1uqrA 154 11.68 c.23.13.1 99779 2ebyA 113 12.62 1imjA 210 13.70 c.69.1.23 71246 1s2oA 244 14.31 c.108.1.10 118846 2qq9A 226 14.37 1r88A 280 15.13 c.69.1.3 97219 2nzxA 371 15.31 2dtrA 226 15.90 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1pfkA 320 18.86 c.89.1.1 35575 1w3iA 293 18.94 c.1.10.1 109152 1amp 291 18.96 2hlkA 255 19.25 2dtr 226 19.37 2ictA 94 19.67 2aumA 317 20.12 c.8.10.1,c.23.16.7 127330,127331 1pea 385 21.24 1n4aA 252 22.84 c.92.2.2 85317 2h09A 155 24.98 1ukz 203 27.66 2bdtA 189 27.76 c.37.1.25 128344 2oq2A 261 27.85 1pb6A 212 29.28 a.4.1.9,a.121.1.1 88017,88018 1pb7A 292 29.53 c.94.1.1 88025 4ts1A 319 29.64 c.26.1.1 31565 1o5kA 306 30.51 c.1.10.1 92504 1on2A 142 31.05 a.4.5.24,a.76.1.1 87103,87104 1dnpA 471 32.10 a.99.1.1,c.28.1.1 18775,31630 1jflA 228 32.72 c.78.2.1,c.78.2.1 71656,71657 1gtzA 156 32.80 c.23.13.1 70539 3bs3A 76 33.63 1d0iA 156 34.10 c.23.13.1 31383 1scuA 288 34.25 c.2.1.8,c.23.4.1 30307,31135 2dgdA 223 35.17 2aunA 317 36.54 c.8.10.1,c.23.16.7 127334,127335 1nsjA 205 37.79 c.1.2.4 28560 2zcmA 192 38.79 1z5nA 242 39.57 2j5bA 348 41.37 1y9qA 192 43.36 a.35.1.8,b.82.1.15 116592,116593 1jysA 242 43.59 c.56.2.1 77216 1z5oA 242 44.90 2igpA 120 45.31 1sgmA 191 46.06 a.4.1.9,a.121.1.1 105537,105538 1z77A 200 47.26 a.4.1.9,a.121.1.1 124588,124589 2o3fA 111 49.22 3bd1A 79 49.87 3c9uA 342 50.26 1sfxA 109 50.84 a.4.5.50 105505 2hxoA 237 51.61 2yx0A 342 52.08 1pwhA 327 52.15 c.79.1.1 95224 1rrmA 386 52.40 e.22.1.2 105081 2obxA 157 53.31 2d1hA 109 53.77 a.4.5.50 131125 1u5hA 273 55.61 c.1.12.5 113037 1t33A 224 55.80 a.4.1.9,a.121.1.1 106295,106296 1zkpA 268 55.92 d.157.1.9 125205 1dhpA 292 56.25 c.1.10.1 29097 2b5aA 77 56.68 a.35.1.3 127882 1rvv1 154 56.80 1cliA 345 56.83 d.79.4.1,d.139.1.1 39816,41459 3b7hA 78 57.46 1hlvA 131 57.85 a.4.1.7,a.4.1.7 65854,65855 1wcwA 261 60.24 1vb3A 428 60.60 c.79.1.1 119942 1xi3A 215 63.06 c.1.3.1 109601 3c2qA 345 63.65 1gm5A 780 64.77 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1h05A 146 66.61 c.23.13.1 76433 1x19A 359 67.36 1zl0A 311 68.69 c.8.10.1,c.23.16.7 125231,125232 1tcvA 287 71.66 2gzmA 267 71.70 1v7bA 185 73.10 a.4.1.9,a.121.1.1 119861,119862 2nx4A 194 73.11 2jfuA 291 73.80 2vprA 207 74.54 2oogA 287 76.01 1z91A 147 77.12 a.4.5.28 124736 2bsxA 253 77.56 c.56.2.1 129128 1j6pA 418 78.18 b.92.1.4,c.1.9.9 77089,77090 1vixA 420 78.20 c.56.5.4,d.58.19.1 100777,100778 2jfzA 255 78.51 2optA 234 78.53 1zrsA 317 80.60 c.8.10.1,c.23.16.7 125556,125557 1ta9A 450 80.96 1din 236 81.33 1xm3A 264 81.45 c.1.31.1 115461 1jhgA 101 82.41 a.4.12.1 19009 1lnwA 147 85.21 a.4.5.28 78104 1knqA 175 85.39 c.37.1.17 72786 1oivA 191 86.82 c.37.1.8 93076 2r7aA 256 87.79 1mzjA 339 88.00 c.95.1.2,c.95.1.2 79700,79701 1tezA 474 88.01 a.99.1.1,c.28.1.1 112409,112410 1vz0A 230 89.39 a.4.14.1,d.268.1.1 108929,108930