# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 1.97e-30 a.35.1.5,c.93.1.1 66652,66653 2fepA 289 8.05e-26 3brqA 296 9.61e-26 3c3kA 285 1.10e-25 2rgyA 290 1.19e-25 2o20A 332 1.56e-25 2iksA 293 1.84e-25 3bblA 287 3.23e-25 3ctpA 330 4.00e-25 3bilA 348 2.43e-24 2qu7A 288 3.23e-24 3cs3A 277 7.95e-24 1dbqA 289 1.03e-23 c.93.1.1 35666 1jyeA 349 4.12e-23 c.93.1.1 67455 1tlfA 301 7.82e-23 c.93.1.1 35687 3clkA 290 7.93e-23 2h0aA 276 3.58e-22 2ioyA 283 1.30e-21 2driA 271 2.55e-21 c.93.1.1 35637 1bykA 255 3.67e-21 c.93.1.1 35706 2fn9A 290 3.86e-21 2dri 271 1.23e-20 1jx6A 342 1.49e-20 c.93.1.1 67406 2fvyA 309 1.02e-19 c.93.1.1 134227 8abp 306 1.15e-19 3brsA 289 2.65e-19 1gca 309 2.88e-19 2qvcA 313 6.56e-19 3d02A 303 7.41e-19 2h3hA 313 7.70e-19 8abpA 306 9.60e-19 c.93.1.1 35647 1tjyA 316 1.00e-18 c.93.1.1 107062 2rjoA 332 1.18e-18 2qh8A 302 1.76e-18 3c6qA 311 3.64e-18 1gudA 288 1.63e-17 c.93.1.1 83326 2fqxA 318 6.60e-15 2hqbA 296 1.39e-14 2bjcA 62 5.92e-07 a.35.1.5 128620 1cjgA 62 6.21e-07 a.35.1.5 17112 2h4aA 325 0.001484 3ckmA 327 0.004668 1peaA 385 0.005885 c.93.1.1 35662 1usgA 346 0.01224 c.93.1.1 99864 1z15A 344 0.01958 2liv 344 0.04576 1ewkA 490 0.06511 c.93.1.1 35712 2e4uA 555 0.1090 1pea 385 0.1822 1jdpA 441 0.2249 c.93.1.1 62906 1dp4A 435 0.2958 c.93.1.1 35710 2pfkA 320 0.5078 c.89.1.1 35577 1zxxA 319 1.042 2hmcA 344 1.105 2jfuA 291 2.508 2hk9A 275 4.036 2hlkA 255 4.501 2i33A 258 5.266 2vlbA 251 5.783 2gzmA 267 7.311 1dhpA 292 8.058 c.1.10.1 29097 2v9dA 343 8.063 2dgdA 223 8.219 2ojpA 292 8.770 1wd7A 261 9.116 c.113.1.1 114526 2jfzA 255 9.301 1o5kA 306 9.484 c.1.10.1 92504 2purA 292 9.588 1ta9A 450 9.677 2qq9A 226 10.53 2o55A 258 10.77 2a6lA 292 12.81 c.1.10.1 126285 1vljA 407 12.90 e.22.1.2 108832 1pfkA 320 13.32 c.89.1.1 35575 1rrmA 386 14.49 e.22.1.2 105081 2dwuA 276 14.80 1n7hA 381 16.48 c.2.1.2 80250 3ce9A 354 16.95 2r91A 286 17.46 2a6nA 292 18.69 c.1.10.1 126289 2bsxA 253 20.58 c.56.2.1 129128 2jfnA 285 21.04 1zccA 248 21.05 c.1.18.3 124903 2eq5A 228 23.04 1scuA 288 23.15 c.2.1.8,c.23.4.1 30307,31135 2q09A 416 24.18 2hk0A 309 24.43 2c4wA 176 26.70 1fx7A 230 26.79 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1w3iA 293 28.53 c.1.10.1 109152 1imjA 210 30.27 c.69.1.23 71246 1u5hA 273 32.37 c.1.12.5 113037 1xkyA 301 32.76 c.1.10.1 122094 2dtrA 226 32.87 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2ehhA 294 35.99 1nsjA 205 38.16 c.1.2.4 28560 1owlA 484 38.78 a.99.1.1,c.28.1.1 93647,93648 2yx0A 342 39.08 1wcwA 261 39.26 1jflA 228 39.30 c.78.2.1,c.78.2.1 71656,71657 1v5xA 203 39.87 c.1.2.4 100377 1jq5A 370 41.48 e.22.1.2 67084 2rfgA 297 42.03 2gjlA 328 43.78 1w9pA 433 44.47 c.1.8.5,d.26.3.1 114412,114413 1j6pA 418 44.93 b.92.1.4,c.1.9.9 77089,77090 2gruA 368 45.23 1uqrA 154 47.78 c.23.13.1 99779 2i9uA 439 47.86 2h09A 155 47.95 1ll7A 392 49.08 c.1.8.5,d.26.3.1 78085,78086 2obxA 157 52.13 1zuwA 272 53.37 1ddzA 496 54.50 c.53.2.1,c.53.2.1 33372,33373 1yt8A 539 55.58 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1vhcA 224 55.85 c.1.10.1 100661 2bdqA 224 56.30 1hl2A 297 56.77 c.1.10.1 83581 1z6kA 293 57.64 3b4uA 294 58.41 1r61A 207 59.30 c.8.8.1 97138 1vh7A 265 62.04 c.1.2.1 100646 1us5A 314 62.59 c.94.1.1 99856 1zq1A 438 63.85 b.38.3.1,c.88.1.1 125489,125490 3cecA 104 63.95 1tezA 474 65.02 a.99.1.1,c.28.1.1 112409,112410 1tqjA 230 65.52 c.1.2.2 107228 2oogA 287 65.90 1thfD 253 68.03 c.1.2.1 28535 2pz0A 252 68.09 1xm3A 264 69.11 c.1.31.1 115461 2ebyA 113 69.42 1ypfA 336 69.63 2qjwA 176 69.97 1zejA 293 70.90 1q1gA 276 71.09 c.56.2.1 95574 1rpxA 230 71.40 c.1.2.2 28536 1pb6A 212 72.95 a.4.1.9,a.121.1.1 88017,88018 1qnf 484 73.34 2o3jA 481 74.15 1rmwA 212 74.52 1nal1 297 79.81 1ec7A 446 79.93 c.1.11.2,d.54.1.1 29218,38862 2r8wA 332 81.56 1n2sA 299 82.41 c.2.1.2 79857 1pb7A 292 82.50 c.94.1.1 88025 2dtr 226 83.38 2gokA 429 85.73 2ovlA 371 86.53 2qzjA 136 89.63