# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 4.94e-15 a.35.1.5,c.93.1.1 66652,66653 2o20A 332 2.22e-12 2fepA 289 2.86e-12 3c3kA 285 1.12e-11 3brqA 296 1.49e-11 3bblA 287 3.58e-11 3bilA 348 8.05e-11 1dbqA 289 9.27e-11 c.93.1.1 35666 2rgyA 290 9.28e-11 1jyeA 349 1.34e-10 c.93.1.1 67455 2iksA 293 2.07e-10 3ctpA 330 2.08e-10 1tlfA 301 2.67e-10 c.93.1.1 35687 2qu7A 288 3.45e-10 3cs3A 277 3.51e-10 3clkA 290 6.01e-10 1bykA 255 3.06e-09 c.93.1.1 35706 2ioyA 283 3.47e-09 2fn9A 290 9.58e-09 2driA 271 1.31e-08 c.93.1.1 35637 2h0aA 276 1.46e-08 3brsA 289 4.91e-08 2dri 271 5.81e-08 2fvyA 309 6.82e-08 c.93.1.1 134227 8abp 306 1.03e-07 1gca 309 1.25e-07 8abpA 306 1.58e-07 c.93.1.1 35647 2qvcA 313 4.59e-07 1gudA 288 7.09e-07 c.93.1.1 83326 3d02A 303 9.81e-07 1jx6A 342 1.12e-06 c.93.1.1 67406 3c6qA 311 1.22e-06 2h3hA 313 1.24e-06 1tjyA 316 6.42e-06 c.93.1.1 107062 2qh8A 302 6.93e-06 2rjoA 332 1.21e-05 2fqxA 318 6.91e-05 2hqbA 296 0.001023 1peaA 385 0.5130 c.93.1.1 35662 2bjcA 62 0.5310 a.35.1.5 128620 1usgA 346 0.6465 c.93.1.1 99864 1cjgA 62 0.6819 a.35.1.5 17112 2liv 344 0.7637 1z15A 344 0.8270 1pea 385 1.013 2h4aA 325 3.198 3ckmA 327 3.563 2e4uA 555 4.380 1ewkA 490 5.016 c.93.1.1 35712 1xel 338 5.316 3b8dA 363 8.228 1rpnA 335 9.245 c.2.1.2 97708 1udcA 338 9.889 c.2.1.2 29785 1ek6A 348 9.98 c.2.1.2 29800 1jdpA 441 11.07 c.93.1.1 62906 3c1oA 321 12.17 1qydA 313 12.35 c.2.1.2 96583 1hdoA 206 12.58 c.2.1.2 60965 1adoA 363 13.42 c.1.10.1 29124 2qghA 425 13.76 1ihoA 283 14.58 c.26.1.4 62390 1zaiA 363 14.73 c.1.10.1 124828 1ohvA 472 14.79 c.67.1.4 93031 1sb8A 352 15.07 c.2.1.2 105410 1wcwA 261 15.77 2a84A 300 15.84 c.26.1.4 126389 1t2aA 375 15.88 c.2.1.2 99078 1e6uA 321 16.36 c.2.1.2 29805 2z1mA 345 16.36 1wd7A 261 16.69 c.113.1.1 114526 2c29D 337 17.17 2c5aA 379 18.28 c.2.1.2 129894 2gasA 307 18.59 2vlbA 251 18.87 1e7rA 321 19.03 c.2.1.2 29808 1dv2A 452 19.47 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2p5yA 311 19.83 1n7kA 234 20.36 c.1.10.1 85374 2ggsA 273 20.41 1orrA 347 21.20 c.2.1.2 93460 1vi2A 300 21.28 c.2.1.7,c.58.1.5 100726,100727 1n2eA 300 21.43 c.26.1.4 85268 2hk9A 275 22.35 2p4hX 322 22.37 1n7hA 381 23.11 c.2.1.2 80250 2pzmA 330 23.29 1qycA 308 24.21 c.2.1.2 96581 1db3A 372 24.86 c.2.1.2 29813 1q1rA 431 25.23 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1xhcA 367 25.73 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1ug6A 431 26.49 c.1.8.4 88490 1j5sA 463 28.50 c.1.9.8 71580 1iow 306 28.82 1ys7A 233 28.97 a.4.6.1,c.23.1.1 123961,123962 2p0oA 372 30.23 1p1xA 260 31.01 c.1.10.1 104060 2qapA 391 31.27 1vhqA 232 31.41 c.23.16.2 100696 1dv1A 449 31.44 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2j5bA 348 31.88 1ydnA 295 32.76 2yqzA 263 33.07 1fjhA 257 33.48 c.2.1.2 29870 2q88A 257 33.78 1wpnA 188 34.30 c.107.1.1 114826 1eyzA 392 35.85 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1vffA 423 36.43 c.1.8.4 120033 1ve1A 304 36.83 c.79.1.1 120007 1iowA 306 36.93 c.30.1.2,d.142.1.1 31713,41481 2cw6A 298 37.10 2q02A 272 37.16 1o60A 292 38.26 c.1.10.4 92532 1v4vA 376 38.26 c.87.1.3 100313 1dp4A 435 38.34 c.93.1.1 35710 1aq0A 306 38.52 c.1.8.3 28842 1wdpA 495 39.94 c.1.8.1 120907 2exxA 306 40.06 1qo2A 241 42.03 c.1.2.1 28533 1xq6A 253 46.73 c.2.1.2 115829 1hyuA 521 46.93 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1ituA 369 47.63 c.1.9.7 71423 2v3aA 384 50.39 1oc2A 348 50.78 c.2.1.2 92765 2cmd 312 52.72 1rkxA 357 53.47 c.2.1.2 97631 1h05A 146 54.54 c.23.13.1 76433 2dknA 255 54.74 1e4iA 447 54.95 c.1.8.4 59225 1v3hA 495 55.07 c.1.8.1 108303 1ehiA 377 55.22 c.30.1.2,d.142.1.1 31716,41484 2dgdA 223 56.63 1edzA 320 57.35 c.2.1.7,c.58.1.2 30287,33935 2bllA 345 58.10 c.2.1.2 128733 1vllA 334 58.17 c.2.1.13 108834 1kjqA 391 58.67 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1q1gA 276 60.06 c.56.2.1 95574 2pljA 419 60.17 2yvqA 143 60.75 1cbfA 285 61.98 c.90.1.1 35587 1jflA 228 63.08 c.78.2.1,c.78.2.1 71656,71657 2cyaA 364 63.62 2b69A 343 64.14 c.2.1.2 127974 2r6jA 318 64.20 1zud1 251 64.22 1uc8A 280 65.35 c.30.1.6,d.142.1.7 99165,99166 1mb4A 370 65.42 c.2.1.3,d.81.1.1 78908,78909 1u9cA 224 65.50 c.23.16.2 113234 1uqrA 154 65.90 c.23.13.1 99779 1qrrA 394 66.17 c.2.1.2 29824 1g2iA 166 66.88 c.23.16.2 31438 1nhp 447 68.01 2dhqA 146 69.16 c.23.13.1 31382 1v8fA 276 70.44 c.26.1.4 100503 2i5gA 325 70.69 1b74A 254 70.85 c.78.2.1,c.78.2.1 35264,35265 1ibrB 462 71.89 a.118.1.1 19120 1n3lA 372 72.56 c.26.1.1 79966 1nvmA 345 72.73 a.5.7.1,c.1.10.5 86249,86250 2cygA 312 72.92 c.1.8.3 131025 1yp2A 451 73.00 b.81.1.4,c.68.1.6 123798,123799 1zxxA 319 73.48 1xgkA 352 73.49 c.2.1.2 115286 2nwqA 272 74.03 1ad4A 266 74.06 c.1.21.1 29670 1t4bA 367 74.15 c.2.1.3,d.81.1.1 106406,106407 1a4mA 349 74.19 c.1.9.1 29014 1wyzA 242 74.22 c.90.1.1 121471 2va1A 256 74.91 1b5tA 275 75.14 c.1.23.1 29676 2pyyA 228 76.24 1byb 495 76.38 1k6xA 352 79.46 c.2.1.2 68238 1jq5A 370 79.68 e.22.1.2 67084 2rhsB 800 80.41 1itcA 516 80.54 b.3.1.1,c.1.8.1 83705,83706 1e19A 314 80.90 c.73.1.1 34967 1zjaA 557 81.71 7odcA 424 81.87 b.49.2.3,c.1.6.1 26488,28650 2ieeA 271 82.58 2r8cA 426 83.06 2o1mA 258 83.21 2bsxA 253 83.28 c.56.2.1 129128 1d0iA 156 83.84 c.23.13.1 31383 1eyeA 280 84.21 c.1.21.1 29672 3cneA 175 84.29 1jw9B 249 84.69 c.111.1.1 67377 1qopB 396 86.07 c.79.1.1 35270 1o6zA 303 87.33 c.2.1.5,d.162.1.1 81107,81108 1gdhA 320 88.27 c.2.1.4,c.23.12.1 30095,31355