Best Alignments for T0441

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1jftA/T0441-1jftA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jftA/T0441-1jftA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9306e-407.30e-220 a.35.1.5
c.93.1.1
2fepA/T0441-2fepA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fepA/T0441-2fepA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4837e-334.97e-172
2o20A/T0441-2o20A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2o20A/T0441-2o20A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4444e-322.09e-191
1dbqA/T0441-1dbqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dbqA/T0441-1dbqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.4907e-312.29e-160 1qpzA c.93.1.1
3bblA/T0441-3bblA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3bblA/T0441-3bblA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.1569e-313.58e-147
3brqA/T0441-3brqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3brqA/T0441-3brqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.4061e-311.24e-157
3ctpA/T0441-3ctpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3ctpA/T0441-3ctpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3307e-296.50e-167
3c3kA/T0441-3c3kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3c3kA/T0441-3c3kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5359e-291.46e-153
2rgyA/T0441-2rgyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2rgyA/T0441-2rgyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8070e-293.07e-141
3bilA/T0441-3bilA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3bilA/T0441-3bilA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.5341e-286.29e-158

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001