# This file is the result of combining several RDB files, specifically # T0441.t2k.dssp-ebghstl.rdb (weight 1.53986) # T0441.t2k.stride-ebghtl.rdb (weight 1.24869) # T0441.t2k.str.rdb (weight 1.53983) # These files were combined by translating their predictions into EHL # predictions with tables generated by compare-real, and then combining # those predictions with weights proportional to their mutual information # with the EHL alphabet. The comments from the individual files follow. # # Comments from T0441.t2k.dssp-ebghstl.rdb # ============================================ # TARGET T0441 # Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0441.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1219 # # ============================================ # Comments from T0441.t2k.stride-ebghtl.rdb # ============================================ # TARGET T0441 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0441.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1219 # # ============================================ # Comments from T0441.t2k.str.rdb # ============================================ # TARGET T0441 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 13 (1 str ) # The input amino acid frequencies were determined from # alignment T0441.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1219 # # ============================================ Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.0547 0.0108 0.9345 2 S 0.1280 0.0226 0.8495 3 E 0.1019 0.0306 0.8675 4 P 0.1022 0.0468 0.8510 5 R 0.1837 0.0858 0.7304 6 K 0.1579 0.1031 0.7390 7 R 0.0935 0.0783 0.8282 8 R 0.0541 0.0967 0.8492 9 S 0.0447 0.0899 0.8654 10 T 0.0318 0.0584 0.9098 11 G 0.0370 0.0296 0.9334 12 N 0.1142 0.0188 0.8670 13 V 0.2420 0.0132 0.7447 14 T 0.2367 0.0386 0.7246 15 L 0.0038 0.9472 0.0490 16 A 0.0037 0.9650 0.0313 17 D 0.0038 0.9700 0.0263 18 V 0.0046 0.9737 0.0218 19 A 0.0051 0.9708 0.0240 20 K 0.0065 0.9584 0.0351 21 Q 0.0050 0.9245 0.0706 22 A 0.0048 0.5858 0.4094 23 G 0.0090 0.0374 0.9535 24 V 0.0185 0.0279 0.9535 25 G 0.0474 0.0296 0.9230 26 T 0.0131 0.8557 0.1312 27 M 0.0069 0.9072 0.0859 28 T 0.0155 0.9180 0.0665 29 V 0.0098 0.9432 0.0470 30 S 0.0148 0.9296 0.0557 31 R 0.0133 0.9492 0.0375 32 A 0.0226 0.9154 0.0620 33 L 0.0337 0.7874 0.1789 34 R 0.0100 0.3816 0.6084 35 T 0.0130 0.0927 0.8942 36 P 0.0200 0.1089 0.8711 37 E 0.0193 0.1840 0.7967 38 L 0.0514 0.1731 0.7755 39 V 0.0715 0.0453 0.8832 40 S 0.0199 0.0298 0.9502 41 D 0.0038 0.9447 0.0515 42 K 0.0037 0.9598 0.0364 43 L 0.0037 0.9698 0.0265 44 R 0.0037 0.9755 0.0207 45 E 0.0037 0.9759 0.0204 46 K 0.0037 0.9759 0.0204 47 I 0.0037 0.9766 0.0197 48 Q 0.0037 0.9770 0.0193 49 Q 0.0037 0.9770 0.0193 50 V 0.0037 0.9770 0.0193 51 V 0.0037 0.9756 0.0206 52 D 0.0038 0.9706 0.0257 53 E 0.0038 0.9305 0.0657 54 L 0.0045 0.4968 0.4988 55 G 0.0094 0.0171 0.9735 56 Y 0.0269 0.0107 0.9624 57 I 0.1499 0.0158 0.8343 58 P 0.0871 0.1263 0.7866 59 N 0.0248 0.2366 0.7386 60 K 0.0051 0.9110 0.0838 61 A 0.0048 0.9399 0.0553 62 A 0.0041 0.9584 0.0375 63 G 0.0044 0.9577 0.0378 64 A 0.0045 0.9464 0.0491 65 L 0.0054 0.9339 0.0607 66 A 0.0090 0.8396 0.1514 67 S 0.0148 0.5157 0.4695 68 A 0.0241 0.1383 0.8376 69 E 0.0520 0.0584 0.8896 70 S 0.1640 0.0301 0.8059 71 Y 0.2806 0.0163 0.7031 72 S 0.7381 0.0080 0.2539 73 I 0.9223 0.0026 0.0751 74 A 0.9612 0.0024 0.0363 75 L 0.9690 0.0024 0.0286 76 I 0.9383 0.0025 0.0592 77 I 0.7865 0.0037 0.2098 78 P 0.3625 0.0116 0.6259 79 S 0.0671 0.0353 0.8977 80 L 0.0307 0.0927 0.8766 81 F 0.0177 0.1391 0.8432 82 E 0.0140 0.2109 0.7751 83 K 0.0074 0.7515 0.2411 84 A 0.0123 0.8368 0.1510 85 C 0.0037 0.9560 0.0403 86 A 0.0037 0.9727 0.0236 87 H 0.0037 0.9738 0.0225 88 F 0.0037 0.9738 0.0225 89 L 0.0037 0.9741 0.0222 90 P 0.0037 0.9697 0.0266 91 S 0.0038 0.9668 0.0295 92 F 0.0037 0.9735 0.0228 93 Q 0.0037 0.9749 0.0214 94 Q 0.0037 0.9748 0.0215 95 A 0.0037 0.9738 0.0225 96 L 0.0037 0.9714 0.0249 97 N 0.0037 0.9615 0.0347 98 K 0.0038 0.8820 0.1143 99 A 0.0042 0.3691 0.6267 100 G 0.0092 0.0082 0.9826 101 Y 0.0659 0.0061 0.9280 102 Q 0.7442 0.0047 0.2511 103 L 0.9641 0.0025 0.0334 104 L 0.9764 0.0024 0.0212 105 L 0.9698 0.0027 0.0275 106 G 0.8904 0.0043 0.1053 107 Y 0.4547 0.0131 0.5322 108 S 0.1009 0.0249 0.8742 109 D 0.0292 0.0462 0.9246 110 Y 0.0222 0.0501 0.9277 111 S 0.0145 0.0987 0.8868 112 I 0.0038 0.9112 0.0850 113 E 0.0038 0.9469 0.0493 114 Q 0.0038 0.9594 0.0369 115 E 0.0037 0.9698 0.0265 116 E 0.0037 0.9715 0.0248 117 K 0.0038 0.9682 0.0281 118 L 0.0037 0.9703 0.0260 119 L 0.0037 0.9740 0.0222 120 S 0.0037 0.9736 0.0227 121 T 0.0037 0.9728 0.0235 122 F 0.0037 0.9694 0.0268 123 L 0.0037 0.9415 0.0548 124 E 0.0043 0.7259 0.2698 125 S 0.0072 0.3593 0.6335 126 R 0.0186 0.0375 0.9438 127 P 0.0491 0.0108 0.9401 128 A 0.1670 0.0063 0.8267 129 G 0.9706 0.0025 0.0270 130 V 0.9824 0.0024 0.0152 131 V 0.9822 0.0024 0.0155 132 L 0.9713 0.0024 0.0263 133 F 0.7295 0.0038 0.2668 134 G 0.2228 0.0259 0.7513 135 S 0.0673 0.1021 0.8306 136 E 0.0503 0.1253 0.8243 137 H 0.0297 0.0641 0.9062 138 S 0.0159 0.0540 0.9301 139 Q 0.0041 0.8740 0.1219 140 R 0.0039 0.9319 0.0642 141 T 0.0041 0.9525 0.0435 142 H 0.0053 0.9573 0.0374 143 Q 0.0062 0.9569 0.0369 144 L 0.0043 0.9654 0.0303 145 L 0.0044 0.9625 0.0332 146 E 0.0041 0.9477 0.0483 147 A 0.0051 0.8319 0.1630 148 S 0.0068 0.4060 0.5872 149 N 0.0105 0.0155 0.9740 150 T 0.0313 0.0060 0.9627 151 P 0.2026 0.0047 0.7927 152 V 0.9463 0.0025 0.0512 153 L 0.9788 0.0024 0.0188 154 E 0.9778 0.0024 0.0198 155 I 0.9410 0.0026 0.0563 156 A 0.5705 0.0068 0.4227 157 E 0.2531 0.0174 0.7295 158 L 0.1386 0.0313 0.8302 159 S 0.0913 0.0560 0.8527 160 S 0.0407 0.0902 0.8692 161 K 0.0405 0.1031 0.8564 162 A 0.0602 0.1136 0.8261 163 S 0.1175 0.0885 0.7940 164 Y 0.2394 0.0531 0.7075 165 L 0.3067 0.0412 0.6520 166 N 0.6847 0.0307 0.2846 167 I 0.8258 0.0187 0.1555 168 G 0.7767 0.0257 0.1976 169 V 0.5424 0.0529 0.4047 170 D 0.1256 0.0797 0.7947 171 H 0.0126 0.6352 0.3522 172 F 0.0038 0.9378 0.0584 173 E 0.0037 0.9651 0.0312 174 V 0.0037 0.9703 0.0260 175 G 0.0037 0.9755 0.0208 176 K 0.0037 0.9752 0.0211 177 A 0.0037 0.9755 0.0207 178 C 0.0037 0.9755 0.0207 179 T 0.0037 0.9755 0.0207 180 R 0.0037 0.9741 0.0222 181 H 0.0037 0.9738 0.0225 182 L 0.0037 0.9749 0.0214 183 I 0.0037 0.9678 0.0285 184 E 0.0039 0.8916 0.1045 185 Q 0.0041 0.3571 0.6387 186 G 0.0074 0.1069 0.8857 187 F 0.0321 0.0378 0.9301 188 K 0.2854 0.0492 0.6654 189 N 0.8376 0.0171 0.1453 190 V 0.9584 0.0075 0.0341 191 G 0.9672 0.0055 0.0273 192 F 0.9551 0.0091 0.0358 193 I 0.8614 0.0091 0.1295 194 G 0.4910 0.0124 0.4966 195 A 0.1479 0.0185 0.8336 196 R 0.0594 0.0650 0.8756 197 G 0.0240 0.1515 0.8245 198 N 0.0185 0.1757 0.8058 199 H 0.0168 0.2716 0.7116 200 S 0.0129 0.5834 0.4037 201 T 0.0128 0.7634 0.2238 202 L 0.0061 0.9104 0.0835 203 Q 0.0047 0.9435 0.0518 204 R 0.0042 0.9447 0.0512 205 Q 0.0041 0.9491 0.0468 206 L 0.0038 0.9463 0.0499 207 H 0.0038 0.9540 0.0422 208 G 0.0040 0.9413 0.0548 209 W 0.0037 0.9702 0.0260 210 Q 0.0037 0.9745 0.0218 211 S 0.0037 0.9752 0.0211 212 A 0.0037 0.9759 0.0204 213 M 0.0037 0.9762 0.0200 214 I 0.0037 0.9725 0.0237 215 E 0.0038 0.9321 0.0641 216 N 0.0041 0.4501 0.5458 217 Y 0.0092 0.0131 0.9777 218 L 0.0203 0.0072 0.9725 219 T 0.1039 0.0089 0.8871 220 P 0.1790 0.0236 0.7974 221 D 0.0858 0.0257 0.8885 222 H 0.0751 0.4282 0.4967 223 F 0.1207 0.4566 0.4228 224 L 0.2623 0.4304 0.3073 225 T 0.4772 0.2725 0.2503 226 T 0.4946 0.1948 0.3106 227 H 0.2889 0.1425 0.5686 228 E 0.0851 0.0670 0.8479 229 A 0.0633 0.0823 0.8544 230 P 0.0688 0.1106 0.8206 231 S 0.0443 0.1371 0.8186 232 S 0.0061 0.7655 0.2284 233 Q 0.0040 0.8584 0.1376 234 L 0.0045 0.8817 0.1138 235 G 0.0047 0.9173 0.0779 236 A 0.0038 0.9588 0.0375 237 E 0.0037 0.9680 0.0283 238 G 0.0037 0.9700 0.0262 239 L 0.0037 0.9733 0.0230 240 A 0.0037 0.9740 0.0222 241 K 0.0037 0.9693 0.0269 242 L 0.0038 0.9603 0.0360 243 L 0.0038 0.9234 0.0728 244 L 0.0041 0.7812 0.2147 245 R 0.0058 0.5149 0.4793 246 D 0.0146 0.0719 0.9135 247 S 0.0269 0.0389 0.9342 248 S 0.0512 0.0297 0.9191 249 L 0.1130 0.0227 0.8642 250 N 0.3560 0.0114 0.6326 251 A 0.9518 0.0035 0.0447 252 L 0.9757 0.0034 0.0209 253 V 0.9747 0.0031 0.0221 254 C 0.9074 0.0044 0.0882 255 S 0.3869 0.0277 0.5854 256 H 0.0757 0.1252 0.7991 257 E 0.0071 0.8512 0.1418 258 E 0.0056 0.9488 0.0456 259 I 0.0041 0.9621 0.0338 260 A 0.0037 0.9720 0.0243 261 I 0.0037 0.9734 0.0229 262 G 0.0037 0.9741 0.0222 263 A 0.0037 0.9762 0.0200 264 L 0.0037 0.9766 0.0197 265 F 0.0037 0.9766 0.0197 266 E 0.0037 0.9762 0.0200 267 C 0.0037 0.9755 0.0207 268 H 0.0037 0.9710 0.0252 269 R 0.0038 0.9067 0.0896 270 R 0.0042 0.3610 0.6348 271 V 0.0099 0.0120 0.9781 272 L 0.0462 0.0063 0.9475 273 K 0.2576 0.0074 0.7350 274 V 0.2745 0.0127 0.7128 275 P 0.1373 0.0399 0.8228 276 T 0.1011 0.0843 0.8146 277 D 0.2995 0.0482 0.6523 278 I 0.7074 0.0152 0.2775 279 A 0.9006 0.0078 0.0916 280 I 0.9495 0.0061 0.0445 281 I 0.9240 0.0051 0.0710 282 C 0.7209 0.0079 0.2712 283 L 0.3889 0.0203 0.5908 284 E 0.1040 0.0317 0.8643 285 G 0.0286 0.1465 0.8249 286 S 0.0335 0.4902 0.4763 287 S 0.0484 0.6560 0.2955 288 M 0.0294 0.7825 0.1881 289 G 0.0369 0.7846 0.1785 290 E 0.0438 0.7367 0.2195 291 H 0.0646 0.5793 0.3561 292 A 0.1216 0.2598 0.6186 293 Y 0.0776 0.0513 0.8711 294 P 0.0623 0.0640 0.8736 295 S 0.1148 0.0812 0.8040 296 L 0.3339 0.0635 0.6026 297 T 0.6051 0.0414 0.3535 298 S 0.6684 0.0456 0.2860 299 A 0.5612 0.0728 0.3660 300 E 0.3871 0.0698 0.5431 301 F 0.2181 0.0542 0.7278 302 D 0.0936 0.0595 0.8469 303 Y 0.0061 0.8161 0.1778 304 E 0.0040 0.8853 0.1107 305 R 0.0038 0.9406 0.0556 306 M 0.0038 0.9459 0.0503 307 G 0.0038 0.9569 0.0394 308 T 0.0037 0.9680 0.0283 309 K 0.0037 0.9731 0.0232 310 A 0.0037 0.9759 0.0204 311 A 0.0037 0.9762 0.0200 312 E 0.0037 0.9762 0.0200 313 K 0.0037 0.9748 0.0215 314 L 0.0037 0.9752 0.0211 315 L 0.0037 0.9749 0.0214 316 H 0.0037 0.9599 0.0363 317 A 0.0038 0.9307 0.0655 318 I 0.0049 0.8514 0.1437 319 K 0.0052 0.4360 0.5587 320 G 0.0097 0.0893 0.9010 321 E 0.0214 0.0354 0.9432 322 P 0.0744 0.0316 0.8940 323 E 0.0759 0.0410 0.8831 324 E 0.0722 0.0409 0.8870 325 R 0.1347 0.0752 0.7902 326 P 0.2628 0.0586 0.6785 327 T 0.5738 0.0321 0.3941 328 S 0.7722 0.0122 0.2156 329 M 0.7432 0.0083 0.2485 330 G 0.5263 0.0089 0.4648 331 F 0.2247 0.0110 0.7644 332 K 0.2308 0.0992 0.6700 333 L 0.5970 0.0890 0.3140 334 K 0.8085 0.0532 0.1383 335 R 0.7887 0.0567 0.1546 336 R 0.7284 0.0655 0.2061 337 A 0.3913 0.1370 0.4718 338 S 0.1660 0.1177 0.7162 339 T 0.1163 0.1228 0.7609 340 A 0.1138 0.0510 0.8352 341 I 0.0660 0.0199 0.9140 342 N 0.0106 0.0051 0.9843