PFRMAT SS
TARGET T0441
AUTHOR SAM-T02-server
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0441.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 1219
METHOD
MODEL 1
M C 0.997
S C 0.872
E C 0.735
P C 0.737
R C 0.568
K C 0.592
R C 0.583
R C 0.469
S C 0.375
T S 0.344
G S 0.587
N C 0.609
V C 0.615
T C 0.727
L H 0.983
A H 0.988
D H 0.992
V H 0.996
A H 0.994
K H 0.982
Q H 0.945
A T 0.491
G T 0.907
V C 0.740
G C 0.904
T H 0.563
M H 0.713
T H 0.827
V H 0.927
S H 0.940
R H 0.947
A H 0.922
L H 0.753
R T 0.713
T T 0.664
P C 0.602
E C 0.329
L C 0.308
V C 0.673
S C 0.925
D H 0.968
K H 0.982
L H 0.993
R H 0.996
E H 0.996
K H 0.997
I H 0.999
Q H 0.999
Q H 0.999
V H 0.999
V H 0.999
D H 0.995
E H 0.970
L H 0.542
G T 0.861
Y C 0.830
I C 0.853
P C 0.687
N C 0.704
K H 0.919
A H 0.950
A H 0.960
G H 0.969
A H 0.959
L H 0.947
A H 0.856
S H 0.499
A T 0.545
E T 0.403
S C 0.628
Y C 0.456
S E 0.717
I E 0.875
A E 0.970
L E 0.984
I E 0.961
I E 0.831
P E 0.419
S C 0.467
L T 0.469
F T 0.375
E S 0.465
K H 0.630
A H 0.772
C H 0.950
A H 0.986
H H 0.990
F H 0.994
L H 0.995
P H 0.990
S H 0.990
F H 0.996
Q H 0.997
Q H 0.996
A H 0.996
L H 0.994
N H 0.982
K H 0.880
A T 0.796
G T 0.917
Y C 0.768
Q E 0.800
L E 0.981
L E 0.990
L E 0.979
G E 0.869
Y C 0.472
S C 0.471
D S 0.413
Y S 0.511
S C 0.682
I H 0.857
E H 0.927
Q H 0.954
E H 0.986
E H 0.989
K H 0.988
L H 0.988
L H 0.993
S H 0.991
T H 0.990
F H 0.990
L H 0.954
E H 0.678
S T 0.610
R T 0.548
P C 0.922
A S 0.613
G E 0.992
V E 0.999
V E 0.998
L E 0.982
F E 0.616
G C 0.508
S C 0.411
E C 0.319
H C 0.492
S C 0.753
Q H 0.870
R H 0.922
T H 0.956
H H 0.984
Q H 0.979
L H 0.984
L H 0.979
E H 0.945
A H 0.779
S T 0.646
N T 0.792
T C 0.769
P C 0.726
V E 0.927
L E 0.989
E E 0.990
I E 0.958
A E 0.724
E C 0.416
L C 0.411
S C 0.430
S S 0.330
K S 0.344
A C 0.334
S C 0.376
Y C 0.479
L C 0.455
N E 0.555
I E 0.796
G E 0.750
V E 0.571
D C 0.573
H H 0.667
F H 0.960
E H 0.982
V H 0.988
G H 0.993
K H 0.995
A H 0.996
C H 0.997
T H 0.998
R H 0.998
H H 0.996
L H 0.996
I H 0.989
E H 0.854
Q T 0.897
G T 0.959
F C 0.898
K E 0.351
N E 0.901
V E 0.980
G E 0.991
F E 0.983
I E 0.864
G C 0.461
A C 0.519
R C 0.424
G T 0.410
N C 0.281
H H 0.305
S H 0.675
T H 0.777
L H 0.917
Q H 0.959
R H 0.970
Q H 0.987
L H 0.991
H H 0.990
G H 0.990
W H 0.998
Q H 0.999
S H 0.998
A H 0.997
M H 0.997
I H 0.990
E H 0.925
N T 0.700
Y T 0.927
L C 0.898
T C 0.760
P C 0.598
D C 0.772
H G 0.350
F G 0.305
L G 0.241
T E 0.566
T E 0.513
H C 0.302
E C 0.429
A C 0.406
P C 0.383
S C 0.576
S H 0.841
Q H 0.898
L H 0.913
G H 0.942
A H 0.978
E H 0.986
G H 0.990
L H 0.991
A H 0.993
K H 0.990
L H 0.980
L H 0.942
L H 0.765
R H 0.473
D C 0.515
S C 0.569
S C 0.739
L C 0.745
N S 0.444
A E 0.951
L E 0.979
V E 0.981
C E 0.895
S E 0.506
H S 0.372
E H 0.792
E H 0.931
I H 0.960
A H 0.982
I H 0.989
G H 0.993
A H 0.997
L H 0.999
F H 0.998
E H 0.997
C H 0.997
H H 0.992
R H 0.924
R T 0.845
V T 0.960
L C 0.876
K C 0.606
V C 0.614
P C 0.681
T S 0.487
D S 0.325
I E 0.838
A E 0.982
I E 0.986
I E 0.944
C E 0.661
L E 0.469
E T 0.349
G T 0.455
S H 0.366
S H 0.522
M H 0.605
G H 0.500
E H 0.465
H H 0.415
A H 0.266
Y C 0.664
P T 0.371
S C 0.284
L C 0.444
T E 0.529
S E 0.521
A E 0.359
E C 0.387
F C 0.408
D C 0.756
Y H 0.830
E H 0.911
R H 0.947
M H 0.955
G H 0.956
T H 0.976
K H 0.989
A H 0.994
A H 0.994
E H 0.996
K H 0.994
L H 0.994
L H 0.992
H H 0.958
A H 0.909
I H 0.824
K T 0.526
G T 0.483
E C 0.583
P C 0.673
E C 0.627
E C 0.645
R C 0.495
P C 0.462
T E 0.552
S E 0.758
M E 0.771
G E 0.690
F C 0.627
K C 0.369
L E 0.601
K E 0.865
R E 0.885
R E 0.780
A E 0.376
S C 0.265
T S 0.334
A S 0.471
I C 0.900
N C 0.999
END