T0441.best_hits

Sequence_ID	Length	Evalue	FSSP-rep	SCOP_domain
1efaA	333	3.4898e-42	1tlfA	c.93.1.1
				a.35.1.5
1jftA	340	4.8435e-42		c.93.1.1
				a.35.1.5
1vpwA	340	6.0296e-41	1qpzA	c.93.1.1
				a.35.1.5
1qpzA	340	4.2890e-39	1qpzA	c.93.1.1
				a.35.1.5
3brqA	296	1.0698e-35
2o20A	332	1.3421e-35
3bblA	287	8.2279e-35
2fepA	289	1.7814e-34
3c3kA	285	8.7943e-32
2rgyA	290	1.7465e-31
1dbqA	289	2.8682e-31	1qpzA	c.93.1.1
2iksA	293	1.5518e-30
3cs3A	277	1.8093e-30
1tlfA	301	1.1071e-29	1tlfA	c.93.1.1
3bilA	348	2.0116e-29
3ctpA	330	2.3794e-29
2qu7A	288	1.1740e-28
3clkA	290	1.1767e-28
1jyeA	349	5.0094e-28		c.93.1.1
2hsgA	332	1.2685e-27		a.35.1.5
				c.93.1.1
2jcgA	332	1.5517e-27
1jh9A	340	1.0103e-25		a.35.1.5
				c.93.1.1
2pugA	340	1.0653e-25	1qpzA	c.93.1.1
				a.35.1.5
1qqbA	340	1.0833e-25	1qpzA	c.93.1.1
				a.35.1.5
2pucA	340	1.1056e-25	1qpzA	a.35.1.5
				c.93.1.1
1jfsA	340	1.2225e-25		c.93.1.1
				a.35.1.5
2ioyA	283	3.3400e-25
1bykA	255	6.9683e-25	1bykA	c.93.1.1
2h0aA	276	7.5233e-25
2nzuG	280	6.2469e-22		c.93.1.1
1jyfA	349	2.2565e-21		c.93.1.1
1lbiA	360	2.2627e-21	1tlfA	c.93.1.1
2pe5A	330	4.0179e-21
1jhzA	289	1.4800e-20		c.93.1.1
2driA	271	3.4401e-20		c.93.1.1
2dri	272	1.9619e-19	2dri
2rjoA	332	1.3186e-18
2fn9A	290	2.5900e-18
1jx6A	342	5.8669e-18		c.93.1.1
1gudA	288	6.2152e-18		c.93.1.1
2qvcA	313	5.5464e-17
2h3hA	313	5.0349e-16
3c6qA	311	5.5191e-16
2p9hA	269	9.0849e-15		c.93.1.1
3brsA	289	2.8350e-14
2fvyA	309	1.3656e-13		c.93.1.1
8abp	306	1.9361e-13	8abp
1gca	310	1.3512e-12	1gca
8abpA	306	4.1917e-12		c.93.1.1
2bjcA	62	1.6232e-10		a.35.1.5
1cjgA	62	1.6894e-10	1pru	a.35.1.5
2gx6A	278	2.0856e-10
1dbpA	271	3.3511e-10		c.93.1.1
1ba2A	271	4.0937e-10	2dri	c.93.1.1
1drjA	271	4.3240e-10		c.93.1.1
1drkA	271	4.7808e-10		c.93.1.1
1lccA	51	1.8603e-09	1pru	a.35.1.5
2fn8A	303	6.4518e-09
3d02A	303	3.2589e-08
1tjyA	316	7.8790e-08		c.93.1.1
1l1mA	62	7.3581e-07		a.35.1.5
1lqcA	56	1.9716e-06		a.35.1.5
1pruA	56	7.2585e-06		a.35.1.5
1uxcA	65	1.2944e-04		a.35.1.5
2ipnA	318	7.3731e-04
2hphA	316	8.2501e-04		c.93.1.1
2ipmA	318	9.1023e-04
2iplA	318	1.1583e-03
3gbpA	307	1.7054e-03		c.93.1.1
1gcaA	309	1.7054e-03		c.93.1.1
2fqxA	318	2.7629e-03
2qh8A	297	4.2345e-03
2hqbA	296	6.5452e-02
1ewkA	490	9.9717e-02	1ewkA	c.93.1.1
3pfk	319	7.9374e-01	3pfk

Please cite the following papers:

Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001
Karplus, K. and Karchin, R. and Draper, J. and Casper, J. and Mandel-Gutfreund, Y. and Diekhans, M. and Hughey, R. ``Combining local-structure, fold-recognition, and new-fold methods for protein structure prediction'' Proteins: Structure Function and Genetics53(S6):491-496,15 Oct 2003
Rachel Karchin, Melissa Cline, Yael Mandel-Gutfreund, and Kevin Karplus. ``Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry.'' Proteins: Structure, Function, and Genetics, 51(4):504--514, June 2003.