Best Alignments for T0440

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2yxoA	1.1513e-27	2yxoA/T0440-2yxoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1m65A	6.3547e-15	1m65A/T0440-1m65A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.6.3.1
2anuA	8.0390e-06	2anuA/T0440-2anuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.6.3.1
2hnhA	1.7258e-03	2hnhA/T0440-2hnhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1a4mA	1.9053e+00	1a4mA/T0440-1a4mA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.1
1w1iE	2.0458e+00	1w1iE/T0440-1w1iE-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.1
1j6oA	2.3085e+00	1j6oA/T0440-1j6oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
1gkpA	3.0432e+00	1gkpA/T0440-1gkpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.92.1.3 c.1.9.6
2gzxA	3.2262e+00	2gzxA/T0440-2gzxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1fkx	3.4788e+00	1fkx/T0440-1fkx-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1h5yA	4.1453e+00	1h5yA/T0440-1h5yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.2.1
1yixA	4.9039e+00	1yixA/T0440-1yixA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
1k6wA	4.9622e+00	1k6wA/T0440-1k6wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.92.1.2 c.1.9.5
1q7zA	5.0112e+00	1q7zA/T0440-1q7zA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.21.2 c.1.26.1
2pgfA	5.0678e+00	2pgfA/T0440-2pgfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zzmA	6.5512e+00	1zzmA/T0440-1zzmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
2ftwA	7.0889e+00	2ftwA/T0440-2ftwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.92.1.3 c.1.9.6
1vflA	7.2658e+00	1vflA/T0440-1vflA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.1
2qulA	7.5640e+00	2qulA/T0440-2qulA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2v5jA	7.9542e+00	2v5jA/T0440-2v5jA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001