# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.00e-19 1m65A 245 1.56e-10 c.6.3.1 84847 2anuA 255 0.001383 c.6.3.1 127058 2hnhA 910 0.001866 1j6oA 268 1.896 c.1.9.12 77088 2qulA 290 2.453 1zzmA 259 2.602 c.1.9.12 125911 2v5jA 287 2.760 1q7zA 566 5.439 c.1.21.2,c.1.26.1 96090,96091 1k6wA 426 5.668 b.92.1.2,c.1.9.5 68236,68237 2fb2A 340 5.955 2gzxA 265 7.459 1tv8A 340 7.885 c.1.28.3 107352 1yixA 265 8.430 c.1.9.12 123371 3cnyA 301 8.495 1a4mA 349 8.859 c.1.9.1 29014 2nzlA 392 9.621 1w1iE 357 11.86 c.1.9.1 109051 1rhcA 330 12.42 c.1.16.3 97468 2pgfA 371 12.79 1s1pA 331 13.31 c.1.7.1 98350 1kcxA 518 15.25 b.92.1.3,c.1.9.6 90953,90954 1ccwA 137 15.91 c.23.6.1 31238 1ceo 343 16.63 1mi3A 322 17.58 c.1.7.1 91274 1vflA 356 19.11 c.1.9.1 120041 2b81A 323 19.16 1qumA 285 19.61 c.1.15.1 29393 3c8nA 356 20.32 1xwyA 264 20.74 c.1.9.12 122411 2yxbA 161 21.48 1ezwA 349 22.91 c.1.16.3 29558 1fkx 349 22.99 2i5gA 325 23.01 1qtwA 285 26.57 c.1.15.1 29392 1j2rA 199 26.59 c.33.1.3 90788 2ragA 417 26.67 1fh9A 312 27.50 c.1.8.3 28913 1xrsB 262 30.89 c.23.6.1,d.230.4.1 115884,115885 1j96A 323 32.63 c.1.7.1 71616 1zgdA 312 33.51 2podA 410 35.60 3b40A 417 35.97 1vjzA 341 36.50 c.1.8.3 100838 1ituA 369 36.71 c.1.9.7 71423 2pp3A 398 37.87 1r30A 369 40.47 c.1.28.1 96895 1hw6A 278 40.66 c.1.7.1 61296 2obiA 183 41.46 1k77A 260 41.94 c.1.15.5 72096 2amxA 376 43.76 c.1.9.1 127024 1yxyA 234 43.99 c.1.2.5 124203 2qw5A 335 44.14 2rduA 387 45.13 5reqA 727 45.39 c.1.19.1,c.23.6.1 29632,31259 1i60A 278 47.28 c.1.15.4 71118 1rvkA 382 47.48 c.1.11.2,d.54.1.1 97928,97929 1tkkA 366 48.81 c.1.11.2,d.54.1.1 107089,107090 1mdl 359 50.49 1qwkA 317 51.01 c.1.7.1 96482 1ekxA 311 53.62 c.78.1.1,c.78.1.1 35088,35089 1goxA 369 54.50 c.1.4.1 28607 1bmtA 246 56.13 a.46.1.1,c.23.6.1 17757,31235 2o14A 375 56.62 1nq6A 302 56.64 c.1.8.3 92046 1im5A 180 58.56 c.33.1.3 66211 2hk0A 309 59.49 1byuA 216 59.92 c.37.1.8 32032 1d8wA 426 60.61 c.1.15.2 29394 1frb 315 60.90 1v0lA 313 60.93 c.1.8.3 108207 1ra0A 430 61.22 b.92.1.2,c.1.9.5 111756,111757 2og9A 393 63.50 1g0cA 364 63.98 c.1.8.3 60165 1us0A 316 66.13 c.1.7.1 99850 2hzgA 401 67.42 1f60A 458 67.83 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1jmvA 141 68.15 c.26.2.4 66897 2p10A 286 68.18 1f07A 321 69.71 c.1.16.3 59560 1zhaA 267 70.33 2du2A 374 70.73 1reqA 727 70.88 c.1.19.1,c.23.6.1 29620,31247 1mdlA 359 71.79 c.1.11.2,d.54.1.1 29247,38891 2tmdA 729 71.83 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1o0yA 260 71.94 c.1.10.1 80756 1el3A 316 73.24 c.1.7.1 28672 3ccgA 190 74.22 1z41A 338 74.30 c.1.4.1 124421 2abbA 364 74.60 c.1.4.1 126517 3bjsA 428 76.52 1i7qB 193 76.97 c.23.16.1 61902 1m5wA 243 77.70 c.1.24.1 84836 1qcwA 410 78.17 c.1.4.1 28622 1lroA 267 79.48 c.1.10.4 78161 2depA 356 79.70 2p0oA 372 80.42 2a5hA 416 81.14 2q8xA 331 82.69 1o94A 729 83.55 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1oc7A 364 84.25 c.6.1.1 86794 1zkpA 268 84.52 d.157.1.9 125205 2hxtA 441 88.80 2a4aA 281 89.46 c.1.10.1 126150 2i7gA 376 89.94