# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yxoA	267	4.48e-22		
1m65A	245	6.81e-12	c.6.3.1	84847
2anuA	255	0.000173	c.6.3.1	127058
2hnhA	910	0.000690		
2qulA	290	1.931		
1zzmA	259	3.427	c.1.9.12	125911
1j6oA	268	3.604	c.1.9.12	77088
1k6wA	426	4.073	b.92.1.2,c.1.9.5	68236,68237
1a4mA	349	4.534	c.1.9.1	29014
1yixA	265	6.020	c.1.9.12	123371
1w1iE	357	8.043	c.1.9.1	109051
3cnyA	301	8.174		
1ceo	343	8.234		
2v5jA	287	8.852		
2i5gA	325	8.920		
2fb2A	340	9.281		
2nzlA	392	9.944		
2pgfA	371	10.29		
1rhcA	330	10.60	c.1.16.3	97468
1ccwA	137	10.63	c.23.6.1	31238
1fkx	349	10.89		
1tv8A	340	11.36	c.1.28.3	107352
1q7zA	566	11.64	c.1.21.2,c.1.26.1	96090,96091
1vflA	356	12.50	c.1.9.1	120041
2yxbA	161	13.22		
1s1pA	331	16.36	c.1.7.1	98350
1ezwA	349	18.35	c.1.16.3	29558
2ragA	417	18.71		
2gzxA	265	18.79		
1qumA	285	19.61	c.1.15.1	29393
3c8nA	356	21.51		
1kcxA	518	21.86	b.92.1.3,c.1.9.6	90953,90954
1xrsB	262	22.40	c.23.6.1,d.230.4.1	115884,115885
1j2rA	199	22.60	c.33.1.3	90788
5reqA	727	27.00	c.1.19.1,c.23.6.1	29632,31259
2b81A	323	27.51		
1qtwA	285	31.14	c.1.15.1	29392
1xwyA	264	31.84	c.1.9.12	122411
1fh9A	312	32.65	c.1.8.3	28913
3b40A	417	34.24		
1mi3A	322	34.41	c.1.7.1	91274
1ituA	369	35.24	c.1.9.7	71423
2tmdA	729	35.46	c.1.4.1,c.3.1.1,c.4.1.1	28616,30317,30602
1zhaA	267	35.53		
1im5A	180	36.44	c.33.1.3	66211
1r30A	369	38.69	c.1.28.1	96895
1zkpA	268	40.35	d.157.1.9	125205
2q8xA	331	40.54		
2obiA	183	41.86		
2podA	410	42.02		
2amxA	376	42.07	c.1.9.1	127024
1be1	137	42.49		
1reqA	727	42.80	c.1.19.1,c.23.6.1	29620,31247
1g0cA	364	43.20	c.1.8.3	60165
2pp3A	398	43.46		
2hk0A	309	43.89		
1lroA	267	44.82	c.1.10.4	78161
1o94A	729	46.13	c.1.4.1,c.3.1.1,c.4.1.1	81200,81201,81202
1yxyA	234	46.55	c.1.2.5	124203
2qw5A	335	46.85		
1goxA	369	46.90	c.1.4.1	28607
1hw6A	278	47.39	c.1.7.1	61296
1f60A	458	51.68	b.43.3.1,b.44.1.1,c.37.1.8	25705,25745,32140
2depA	356	52.48		
1h5vA	304	53.99	c.1.8.3	70898
1j96A	323	54.02	c.1.7.1	71616
2rduA	387	54.79		
1eceA	358	55.10	c.1.8.3	28813
2du2A	374	56.70		
1nq6A	302	58.09	c.1.8.3	92046
1ra0A	430	58.83	b.92.1.2,c.1.9.5	111756,111757
1k77A	260	60.38	c.1.15.5	72096
1d3gA	367	62.13	c.1.4.1	28600
1rk6A	496	62.66	b.92.1.6,b.92.1.6,c.1.9.11	97599,97600,97601
1z41A	338	64.23	c.1.4.1	124421
1ecxA	384	65.74	c.67.1.3	34431
1rvkA	382	66.05	c.1.11.2,d.54.1.1	97928,97929
1d8wA	426	67.72	c.1.15.2	29394
2ajrA	331	73.74	c.72.1.1	126892
2p10A	286	74.46		
2a5hA	416	74.91		
2ac2A	309	75.40		
1byuA	216	77.36	c.37.1.8	32032
2oczA	231	81.03		
1ekxA	311	81.90	c.78.1.1,c.78.1.1	35088,35089
1kl1A	419	82.37	c.67.1.4	72663
2hyxA	352	83.17		
1a5kC	566	83.52	b.92.1.1,c.1.9.2	28425,29047
1v0lA	313	84.20	c.1.8.3	108207
1vd6A	224	84.33	c.1.18.3	119991
1bmtA	246	84.77	a.46.1.1,c.23.6.1	17757,31235
1nmoA	247	85.30	c.135.1.1	91980
1vjzA	341	85.35	c.1.8.3	100838
2og9A	393	85.81		
2bp1A	360	86.04		
2fywA	267	86.83	c.135.1.1	134408
2o14A	375	87.03