# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 3.71e-29 1m65A 245 3.27e-15 c.6.3.1 84847 2anuA 255 8.30e-06 c.6.3.1 127058 2hnhA 910 3.28e-05 2qulA 290 0.4866 1zzmA 259 0.5205 c.1.9.12 125911 1j6oA 268 0.5297 c.1.9.12 77088 2v5jA 287 0.7999 1yixA 265 3.069 c.1.9.12 123371 1k6wA 426 3.726 b.92.1.2,c.1.9.5 68236,68237 1a4mA 349 5.893 c.1.9.1 29014 2gzxA 265 6.825 3cnyA 301 8.040 1tv8A 340 8.672 c.1.28.3 107352 2yxbA 161 8.900 1xrsB 262 9.98 c.23.6.1,d.230.4.1 115884,115885 1ccwA 137 10.04 c.23.6.1 31238 1qumA 285 10.29 c.1.15.1 29393 1q7zA 566 10.51 c.1.21.2,c.1.26.1 96090,96091 1r30A 369 11.07 c.1.28.1 96895 2pgfA 371 11.12 2fb2A 340 11.51 2depA 356 11.73 1kcxA 518 12.11 b.92.1.3,c.1.9.6 90953,90954 2i5gA 325 12.13 1vflA 356 12.55 c.1.9.1 120041 1v77A 212 13.67 c.6.3.2 108402 1fkx 349 13.82 1be1 137 14.79 1rhcA 330 15.88 c.1.16.3 97468 1qtwA 285 16.03 c.1.15.1 29392 2dr1A 386 16.14 1k77A 260 16.15 c.1.15.5 72096 1i60A 278 19.09 c.1.15.4 71118 1ezwA 349 19.43 c.1.16.3 29558 2podA 410 19.62 2nzlA 392 21.50 1j2rA 199 22.85 c.33.1.3 90788 1w1iE 357 23.56 c.1.9.1 109051 1xwyA 264 23.73 c.1.9.12 122411 1ekxA 311 24.65 c.78.1.1,c.78.1.1 35088,35089 1qdbA 473 24.98 a.138.1.3 19688 2bp1A 360 27.23 5reqA 727 27.47 c.1.19.1,c.23.6.1 29632,31259 1zhaA 267 29.89 2o14A 375 30.05 1m5wA 243 30.29 c.1.24.1 84836 1ad4A 266 30.45 c.1.21.1 29670 1f60A 458 32.25 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1eyeA 280 32.26 c.1.21.1 29672 1tif 78 34.81 3c8nA 356 35.42 1aj2 282 36.05 1d0vA 356 36.57 c.39.1.1 32476 2b81A 323 36.91 1tx2A 297 36.94 c.1.21.1 107420 2vhlA 396 38.73 1hw6A 278 38.82 c.1.7.1 61296 1exbA 332 38.84 c.1.7.1 28666 1aj2A 282 39.58 c.1.21.1 29665 2pp3A 398 40.23 1d3gA 367 41.00 c.1.4.1 28600 2hk0A 309 41.06 1ebdA 455 41.88 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 1v2dA 381 42.36 c.67.1.1 108281 1s1pA 331 43.16 c.1.7.1 98350 1ii7A 333 45.28 d.159.1.4 62415 2amxA 376 45.37 c.1.9.1 127024 1reqA 727 45.93 c.1.19.1,c.23.6.1 29620,31247 1yxyA 234 46.47 c.1.2.5 124203 1acmA 310 47.32 c.78.1.1,c.78.1.1 35180,35181 1zkpA 268 47.53 d.157.1.9 125205 1bmtA 246 49.21 a.46.1.1,c.23.6.1 17757,31235 1lroA 267 49.31 c.1.10.4 78161 1vjoA 393 49.35 c.67.1.3 100827 1qwtA 255 49.42 b.26.1.3 96501 1rk6A 496 51.06 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1o94A 729 51.55 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1byuA 216 51.65 c.37.1.8 32032 1vr6A 350 52.84 c.1.10.4 120439 1wohA 305 53.82 c.42.1.1 109446 2ragA 417 53.86 8atcA 310 53.88 c.78.1.1,c.78.1.1 35132,35133 2dr3A 247 54.05 1f07A 321 56.19 c.1.16.3 59560 1goxA 369 56.27 c.1.4.1 28607 1ceo 343 56.71 1tqjA 230 60.11 c.1.2.2 107228 1qrqA 325 60.11 c.1.7.1 28667 2csgA 424 60.31 b.82.2.12 130768 1zjaA 557 61.54 2obiA 183 61.70 1v0lA 313 61.74 c.1.8.3 108207 2i7gA 376 61.87 1d8wA 426 62.44 c.1.15.2 29394 1fh9A 312 64.35 c.1.8.3 28913 1eceA 358 64.44 c.1.8.3 28813 1rvkA 382 64.57 c.1.11.2,d.54.1.1 97928,97929 2q8xA 331 65.52 1qg4A 216 65.69 c.37.1.8 32035 1rpxA 230 67.04 c.1.2.2 28536 2abbA 364 67.12 c.1.4.1 126517 2qw5A 335 68.41 1m7xA 617 68.54 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1d1qA 161 68.65 c.44.1.1 32642 1ho1A 242 69.03 c.1.24.1 61097 1ituA 369 69.94 c.1.9.7 71423 3ccgA 190 71.25 1zgdA 312 71.48 2fliA 220 71.86 c.1.2.2 133714 1h5vA 304 72.16 c.1.8.3 70898 2p0oA 372 73.87 1y44A 320 74.54 d.157.1.7 122608 1gveA 327 74.70 c.1.7.1 70597 1y80A 210 75.63 1gqnA 252 76.30 c.1.10.1 90514 1tkkA 366 76.30 c.1.11.2,d.54.1.1 107089,107090 2du2A 374 77.38 2hyxA 352 77.87 1tifA 78 78.20 d.15.8.1 37836 1rvgA 305 78.43 c.1.10.2 97920 1wu7A 434 78.83 c.51.1.1,d.104.1.1 121275,121276 1wr8A 231 79.40 c.108.1.10 114836 2z00A 426 81.23 1uumA 372 83.41 c.1.4.1 100010 1tksA 204 84.44 d.115.1.2 107114 2rduA 387 84.69 1kl1A 419 85.01 c.67.1.4 72663 2e7yA 280 85.44 3b40A 417 86.12 1xfkA 336 86.17 c.42.1.1 115264 2pozA 392 86.60 2og9A 393 86.70 1m32A 366 87.26 c.67.1.3 78508 2h09A 155 88.51 2yxzA 311 89.80