# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 8.27e-29 1m65A 245 2.57e-15 c.6.3.1 84847 2anuA 255 6.12e-05 c.6.3.1 127058 2hnhA 910 0.000134 2v5jA 287 0.8722 1j6oA 268 1.133 c.1.9.12 77088 1zzmA 259 1.705 c.1.9.12 125911 2qulA 290 2.058 2gzxA 265 4.386 1yixA 265 4.840 c.1.9.12 123371 2yxbA 161 6.083 1rhcA 330 7.943 c.1.16.3 97468 1q7zA 566 8.097 c.1.21.2,c.1.26.1 96090,96091 2nzlA 392 8.790 1ezwA 349 9.754 c.1.16.3 29558 1ccwA 137 10.35 c.23.6.1 31238 2fb2A 340 14.13 3cnyA 301 14.29 2i5gA 325 14.33 1a4mA 349 14.39 c.1.9.1 29014 1xfkA 336 16.99 c.42.1.1 115264 2dr1A 386 17.97 3c8nA 356 18.46 1lroA 267 19.08 c.1.10.4 78161 1j2rA 199 20.33 c.33.1.3 90788 1vflA 356 20.43 c.1.9.1 120041 1xrsB 262 22.75 c.23.6.1,d.230.4.1 115884,115885 1zhaA 267 24.18 1vjzA 341 24.38 c.1.8.3 100838 2pgfA 371 24.41 1kl1A 419 24.55 c.67.1.4 72663 1s1pA 331 25.33 c.1.7.1 98350 1tif 78 26.39 5reqA 727 27.95 c.1.19.1,c.23.6.1 29632,31259 1xwyA 264 28.59 c.1.9.12 122411 1m5wA 243 29.05 c.1.24.1 84836 1ceo 343 29.19 1d1qA 161 29.22 c.44.1.1 32642 1k6wA 426 29.54 b.92.1.2,c.1.9.5 68236,68237 1w1iE 357 32.95 c.1.9.1 109051 2p10A 286 33.19 1fkx 349 33.43 2pp3A 398 34.61 2depA 356 34.73 1egzA 291 34.90 c.1.8.3 28828 1elqA 390 35.23 c.67.1.3 34436 1tv8A 340 35.71 c.1.28.3 107352 1qtwA 285 37.21 c.1.15.1 29392 1reqA 727 39.02 c.1.19.1,c.23.6.1 29620,31247 3ccgA 190 39.68 1k77A 260 39.68 c.1.15.5 72096 1rvkA 382 40.41 c.1.11.2,d.54.1.1 97928,97929 1v77A 212 42.48 c.6.3.2 108402 1im5A 180 43.07 c.33.1.3 66211 1mdl 359 43.83 1d3gA 367 44.46 c.1.4.1 28600 1uumA 372 46.38 c.1.4.1 100010 1o1yA 239 46.89 c.23.16.1 86554 1vd6A 224 48.68 c.1.18.3 119991 2hzgA 401 49.22 1fh9A 312 49.89 c.1.8.3 28913 1ho1A 242 52.08 c.1.24.1 61097 2rduA 387 52.22 1yxyA 234 52.63 c.1.2.5 124203 2qw5A 335 53.16 1ecxA 384 53.30 c.67.1.3 34431 2o14A 375 53.49 1kcxA 518 53.62 b.92.1.3,c.1.9.6 90953,90954 2obiA 183 55.23 1z57A 339 55.29 1tifA 78 56.04 d.15.8.1 37836 1v0lA 313 56.07 c.1.8.3 108207 2podA 410 56.65 1goxA 369 57.07 c.1.4.1 28607 2hxtA 441 57.69 1tkkA 366 57.89 c.1.11.2,d.54.1.1 107089,107090 1nq6A 302 58.54 c.1.8.3 92046 1ekxA 311 62.84 c.78.1.1,c.78.1.1 35088,35089 2btdA 210 63.87 2hyxA 352 64.79 2abbA 364 65.41 c.1.4.1 126517 2b81A 323 65.84 1ii7A 333 67.01 d.159.1.4 62415 1bmtA 246 67.12 a.46.1.1,c.23.6.1 17757,31235 1r30A 369 67.69 c.1.28.1 96895 1f60A 458 68.08 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2al1A 436 68.21 c.1.11.1,d.54.1.1 126949,126950 1d0vA 356 68.24 c.39.1.1 32476 1xyfA 436 69.54 b.42.2.1,c.1.8.3 25577,28909 1mi3A 322 70.23 c.1.7.1 91274 1yfsA 465 70.59 a.203.1.1,d.104.1.1 123088,123089 2qgyA 391 72.16 1a2zA 220 72.54 c.56.4.1 33794 2du2A 374 72.87 1zgdA 312 72.93 1volA 204 73.47 a.74.1.2,a.74.1.2 18370,18371 2hk0A 309 73.84 1aj2A 282 74.33 c.1.21.1 29665 1zkpA 268 74.42 d.157.1.9 125205 1mdlA 359 74.65 c.1.11.2,d.54.1.1 29247,38891 2og9A 393 74.84 1oneA 436 77.59 c.1.11.1,d.54.1.1 29200,38844 1iomA 377 78.09 a.103.1.1 83698 2oczA 231 78.33 3bjsA 428 78.75 2jg2A 422 78.85 1vjoA 393 78.97 c.67.1.3 100827 1yt3A 375 80.93 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 1vr6A 350 80.98 c.1.10.4 120439 1iu8A 206 81.79 c.56.4.1 71436 3b40A 417 83.02 2amxA 376 83.23 c.1.9.1 127024 3ciwA 348 84.48 2ragA 417 84.85 1vbuA 328 85.36 c.1.8.3 119963 1sxjA 511 87.37 a.80.1.1,c.37.1.20 106081,106082 1nnlA 225 87.39 c.108.1.4 85906 2o08A 188 89.03