# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 8.56e-27 1m65A 245 2.78e-14 c.6.3.1 84847 2anuA 255 0.000204 c.6.3.1 127058 2hnhA 910 0.000317 1j6oA 268 0.6592 c.1.9.12 77088 2v5jA 287 1.149 1zzmA 259 1.752 c.1.9.12 125911 2qulA 290 1.760 2gzxA 265 4.888 1yixA 265 5.328 c.1.9.12 123371 2yxbA 161 6.433 1q7zA 566 7.022 c.1.21.2,c.1.26.1 96090,96091 1rhcA 330 7.221 c.1.16.3 97468 2i5gA 325 9.731 2fb2A 340 10.01 2nzlA 392 10.46 1xfkA 336 10.54 c.42.1.1 115264 1ccwA 137 10.62 c.23.6.1 31238 1a4mA 349 11.31 c.1.9.1 29014 1ezwA 349 11.37 c.1.16.3 29558 3cnyA 301 13.22 1k6wA 426 15.20 b.92.1.2,c.1.9.5 68236,68237 1s1pA 331 15.69 c.1.7.1 98350 3c8nA 356 19.29 1xrsB 262 20.16 c.23.6.1,d.230.4.1 115884,115885 1j2rA 199 20.31 c.33.1.3 90788 2pgfA 371 21.13 2dr1A 386 21.39 1tv8A 340 22.21 c.1.28.3 107352 1lroA 267 23.07 c.1.10.4 78161 1ceo 343 24.25 1xwyA 264 25.76 c.1.9.12 122411 1qtwA 285 26.58 c.1.15.1 29392 2pp3A 398 26.63 1fkx 349 26.83 1egzA 291 27.75 c.1.8.3 28828 1kl1A 419 27.97 c.67.1.4 72663 1vjzA 341 28.70 c.1.8.3 100838 1vflA 356 28.94 c.1.9.1 120041 1zhaA 267 28.95 1rvkA 382 29.06 c.1.11.2,d.54.1.1 97928,97929 1fh9A 312 29.23 c.1.8.3 28913 1w1iE 357 32.25 c.1.9.1 109051 1mi3A 322 32.50 c.1.7.1 91274 1m5wA 243 33.05 c.1.24.1 84836 5reqA 727 33.84 c.1.19.1,c.23.6.1 29632,31259 1d1qA 161 34.40 c.44.1.1 32642 2depA 356 35.14 1r30A 369 37.20 c.1.28.1 96895 1reqA 727 37.26 c.1.19.1,c.23.6.1 29620,31247 2abbA 364 37.59 c.1.4.1 126517 2ragA 417 38.64 1tkkA 366 39.11 c.1.11.2,d.54.1.1 107089,107090 2qw5A 335 39.38 1d3gA 367 39.69 c.1.4.1 28600 1mdl 359 40.34 3b40A 417 40.71 1kcxA 518 41.01 b.92.1.3,c.1.9.6 90953,90954 2o14A 375 41.55 2p10A 286 41.68 3ccgA 190 42.60 1tif 78 44.07 1im5A 180 45.02 c.33.1.3 66211 1aj2A 282 45.46 c.1.21.1 29665 1nq6A 302 46.40 c.1.8.3 92046 2hzgA 401 46.56 1uumA 372 46.95 c.1.4.1 100010 2hk0A 309 47.64 1k77A 260 47.84 c.1.15.5 72096 1v77A 212 48.05 c.6.3.2 108402 1ekxA 311 48.98 c.78.1.1,c.78.1.1 35088,35089 1zgdA 312 49.20 2hxtA 441 50.71 1elqA 390 51.12 c.67.1.3 34436 1ecxA 384 51.64 c.67.1.3 34431 1bmtA 246 52.76 a.46.1.1,c.23.6.1 17757,31235 2og9A 393 54.12 1ituA 369 54.55 c.1.9.7 71423 2obiA 183 54.83 1j96A 323 55.32 c.1.7.1 71616 3ciwA 348 56.40 1vjoA 393 56.77 c.67.1.3 100827 2hyxA 352 56.98 3bjsA 428 57.05 2rduA 387 57.31 1f60A 458 58.68 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1yxyA 234 58.70 c.1.2.5 124203 2podA 410 59.12 1goxA 369 59.37 c.1.4.1 28607 1aj2 282 60.03 1vd6A 224 60.89 c.1.18.3 119991 2al1A 436 61.87 c.1.11.1,d.54.1.1 126949,126950 1mdlA 359 66.21 c.1.11.2,d.54.1.1 29247,38891 1z41A 338 66.35 c.1.4.1 124421 1a2zA 220 66.41 c.56.4.1 33794 1v0lA 313 66.63 c.1.8.3 108207 2amxA 376 70.49 c.1.9.1 127024 2b81A 323 70.80 1byuA 216 71.01 c.37.1.8 32032 2qgyA 391 71.74 1tx2A 297 73.90 c.1.21.1 107420 1ho1A 242 75.31 c.1.24.1 61097 1qumA 285 75.84 c.1.15.1 29393 1ii7A 333 77.23 d.159.1.4 62415 1vr6A 350 77.48 c.1.10.4 120439 1o1yA 239 79.10 c.23.16.1 86554 1sxjA 511 79.17 a.80.1.1,c.37.1.20 106081,106082 2gouA 365 80.32 1z57A 339 80.35 1h5vA 304 82.43 c.1.8.3 70898 1iu8A 206 83.14 c.56.4.1 71436 2al2A 436 83.22 c.1.11.1,d.54.1.1 126953,126954 2a5hA 416 83.31 1oc7A 364 83.92 c.6.1.1 86794 1o0yA 260 84.16 c.1.10.1 80756 2bp1A 360 84.35 2i2wA 212 84.86 2cw6A 298 85.13 1xyfA 436 85.65 b.42.2.1,c.1.8.3 25577,28909 1yfsA 465 86.25 a.203.1.1,d.104.1.1 123088,123089 2jg2A 422 87.74 1zkpA 268 88.42 d.157.1.9 125205 1ad4A 266 88.63 c.1.21.1 29670