# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 6.49e-27 1m65A 245 2.89e-14 c.6.3.1 84847 2anuA 255 0.000233 c.6.3.1 127058 2hnhA 910 0.000362 1j6oA 268 0.7547 c.1.9.12 77088 2v5jA 287 0.997 1zzmA 259 1.547 c.1.9.12 125911 2qulA 290 1.752 2gzxA 265 3.553 1yixA 265 3.990 c.1.9.12 123371 1q7zA 566 4.822 c.1.21.2,c.1.26.1 96090,96091 2yxbA 161 5.297 1rhcA 330 5.970 c.1.16.3 97468 2nzlA 392 7.847 2fb2A 340 8.004 2i5gA 325 10.05 1ezwA 349 10.09 c.1.16.3 29558 1ccwA 137 10.59 c.23.6.1 31238 3cnyA 301 11.94 1j2rA 199 15.05 c.33.1.3 90788 1s1pA 331 17.24 c.1.7.1 98350 1xfkA 336 17.84 c.42.1.1 115264 1lroA 267 18.80 c.1.10.4 78161 3c8nA 356 19.96 1tv8A 340 22.38 c.1.28.3 107352 1xwyA 264 22.66 c.1.9.12 122411 1zhaA 267 22.92 5reqA 727 23.02 c.1.19.1,c.23.6.1 29632,31259 1a4mA 349 23.54 c.1.9.1 29014 1k6wA 426 25.25 b.92.1.2,c.1.9.5 68236,68237 1fh9A 312 25.75 c.1.8.3 28913 1xrsB 262 26.83 c.23.6.1,d.230.4.1 115884,115885 1kl1A 419 27.09 c.67.1.4 72663 2depA 356 27.17 2dr1A 386 28.96 2pp3A 398 29.10 1ceo 343 29.66 1rvkA 382 29.67 c.1.11.2,d.54.1.1 97928,97929 2pgfA 371 29.94 1vjzA 341 30.69 c.1.8.3 100838 1reqA 727 31.03 c.1.19.1,c.23.6.1 29620,31247 2abbA 364 32.37 c.1.4.1 126517 1v77A 212 32.50 c.6.3.2 108402 1d3gA 367 33.00 c.1.4.1 28600 2p10A 286 33.27 1mdl 359 33.95 1m5wA 243 36.11 c.1.24.1 84836 1im5A 180 36.39 c.33.1.3 66211 1zgdA 312 38.55 2obiA 183 38.96 1fkx 349 39.74 3ccgA 190 39.85 2podA 410 39.97 2ragA 417 40.69 1uumA 372 40.79 c.1.4.1 100010 1aj2A 282 41.30 c.1.21.1 29665 1w1iE 357 42.26 c.1.9.1 109051 3b40A 417 42.63 1qtwA 285 42.92 c.1.15.1 29392 1tkkA 366 43.07 c.1.11.2,d.54.1.1 107089,107090 1ecxA 384 43.97 c.67.1.3 34431 1vflA 356 44.19 c.1.9.1 120041 2rduA 387 44.38 1a2zA 220 44.88 c.56.4.1 33794 1vd6A 224 44.98 c.1.18.3 119991 1bmtA 246 45.11 a.46.1.1,c.23.6.1 17757,31235 2hzgA 401 47.33 2o14A 375 47.43 1tif 78 47.44 1d1qA 161 47.61 c.44.1.1 32642 1nq6A 302 48.54 c.1.8.3 92046 1aj2 282 48.67 1k77A 260 49.03 c.1.15.5 72096 2al1A 436 49.23 c.1.11.1,d.54.1.1 126949,126950 2qgyA 391 51.41 1iu8A 206 51.44 c.56.4.1 71436 1tx2A 297 52.29 c.1.21.1 107420 1yxyA 234 53.12 c.1.2.5 124203 1v0lA 313 53.59 c.1.8.3 108207 2qw5A 335 53.60 1vr6A 350 54.56 c.1.10.4 120439 1ii7A 333 55.02 d.159.1.4 62415 1ituA 369 55.15 c.1.9.7 71423 3ciwA 348 56.10 2hxtA 441 56.24 2hyxA 352 58.78 3bjsA 428 59.88 1mi3A 322 60.04 c.1.7.1 91274 1egzA 291 60.41 c.1.8.3 28828 1o1yA 239 60.59 c.23.16.1 86554 1goxA 369 61.54 c.1.4.1 28607 1kcxA 518 61.73 b.92.1.3,c.1.9.6 90953,90954 1mdlA 359 61.97 c.1.11.2,d.54.1.1 29247,38891 1ekxA 311 62.09 c.78.1.1,c.78.1.1 35088,35089 1qumA 285 62.30 c.1.15.1 29393 1z41A 338 62.86 c.1.4.1 124421 1oneA 436 63.12 c.1.11.1,d.54.1.1 29200,38844 1j96A 323 65.04 c.1.7.1 71616 2og9A 393 66.12 1f60A 458 66.21 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1d0vA 356 69.50 c.39.1.1 32476 1r30A 369 70.69 c.1.28.1 96895 2al2A 436 71.03 c.1.11.1,d.54.1.1 126953,126954 1pe1A 267 72.08 c.1.10.4 94591 2hk0A 309 72.57 2gouA 365 73.00 1elqA 390 74.41 c.67.1.3 34436 1vjoA 393 75.80 c.67.1.3 100827 1yt3A 375 76.06 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 1z57A 339 76.82 1hw6A 278 76.93 c.1.7.1 61296 2o08A 188 77.50 1vbuA 328 78.52 c.1.8.3 119963 2amxA 376 80.02 c.1.9.1 127024 2b81A 323 80.29 2q8xA 331 80.34 2du2A 374 81.54 1o0yA 260 82.82 c.1.10.1 80756 1xyfA 436 86.84 b.42.2.1,c.1.8.3 25577,28909 1yfsA 465 87.22 a.203.1.1,d.104.1.1 123088,123089 2oczA 231 88.23 2btdA 210 88.36 1nbaA 264 89.99 c.33.1.3 31753