# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yxoA	267	2.02e-24		
1m65A	245	4.12e-13	c.6.3.1	84847
2anuA	255	0.000162	c.6.3.1	127058
2hnhA	910	0.000583		
2qulA	290	1.228		
2v5jA	287	1.723		
1j6oA	268	3.375	c.1.9.12	77088
1yixA	265	4.894	c.1.9.12	123371
1q7zA	566	4.909	c.1.21.2,c.1.26.1	96090,96091
1zzmA	259	5.227	c.1.9.12	125911
2fb2A	340	8.660		
1k6wA	426	9.774	b.92.1.2,c.1.9.5	68236,68237
1ezwA	349	10.79	c.1.16.3	29558
2yxbA	161	11.05		
2gzxA	265	11.19		
1tv8A	340	12.19	c.1.28.3	107352
3cnyA	301	12.74		
1ccwA	137	14.78	c.23.6.1	31238
2nzlA	392	15.13		
1xfkA	336	22.05	c.42.1.1	115264
1qumA	285	23.06	c.1.15.1	29393
2i5gA	325	24.59		
1rhcA	330	24.82	c.1.16.3	97468
3c8nA	356	24.90		
1ecxA	384	26.69	c.67.1.3	34431
1vflA	356	28.04	c.1.9.1	120041
1a4mA	349	28.64	c.1.9.1	29014
1f07A	321	29.02	c.1.16.3	59560
2pgfA	371	29.45		
1kl1A	419	30.10	c.67.1.4	72663
1ekxA	311	30.48	c.78.1.1,c.78.1.1	35088,35089
1ceo	343	30.54		
5reqA	727	32.14	c.1.19.1,c.23.6.1	29632,31259
1xwyA	264	32.30	c.1.9.12	122411
1s1pA	331	32.51	c.1.7.1	98350
1qtwA	285	32.69	c.1.15.1	29392
1xrsB	262	34.58	c.23.6.1,d.230.4.1	115884,115885
2dr1A	386	34.63		
2b81A	323	34.80		
1j2rA	199	35.01	c.33.1.3	90788
1qdbA	473	36.54	a.138.1.3	19688
1bmtA	246	36.74	a.46.1.1,c.23.6.1	17757,31235
2ragA	417	37.56		
1tif	78	41.96		
1yxyA	234	42.22	c.1.2.5	124203
2obiA	183	42.44		
3ccgA	190	42.79		
1zhaA	267	44.35		
1fkx	349	45.76		
1d3gA	367	47.86	c.1.4.1	28600
1elqA	390	50.89	c.67.1.3	34436
1v77A	212	51.56	c.6.3.2	108402
1f60A	458	51.74	b.43.3.1,b.44.1.1,c.37.1.8	25705,25745,32140
1reqA	727	54.61	c.1.19.1,c.23.6.1	29620,31247
1uumA	372	56.51	c.1.4.1	100010
1acmA	310	56.52	c.78.1.1,c.78.1.1	35180,35181
2uzhA	165	58.72		
2qw5A	335	58.78		
1im5A	180	60.59	c.33.1.3	66211
2pp3A	398	61.17		
1kcxA	518	61.38	b.92.1.3,c.1.9.6	90953,90954
2yxzA	311	66.74		
1ituA	369	68.46	c.1.9.7	71423
1nbaA	264	69.31	c.33.1.3	31753
8atcA	310	70.52	c.78.1.1,c.78.1.1	35132,35133
1zkpA	268	70.78	d.157.1.9	125205
1nmoA	247	73.81	c.135.1.1	91980
2amxA	376	75.81	c.1.9.1	127024
1fh9A	312	77.35	c.1.8.3	28913
2hk0A	309	77.68		
2ajrA	331	79.84	c.72.1.1	126892
2podA	410	81.92		
1h5vA	304	82.46	c.1.8.3	70898
1o1yA	239	84.66	c.23.16.1	86554
2h09A	155	85.01		
1w1iE	357	85.76	c.1.9.1	109051
2fywA	267	85.83	c.135.1.1	134408
2p0oA	372	87.73		
2al2A	436	88.11	c.1.11.1,d.54.1.1	126953,126954
1qwtA	255	88.37	b.26.1.3	96501
2p10A	286	88.43		
1g0cA	364	88.44	c.1.8.3	60165
1d8wA	426	88.53	c.1.15.2	29394