# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 6.91e-21 1m65A 245 4.38e-11 c.6.3.1 84847 2anuA 255 0.000302 c.6.3.1 127058 2hnhA 910 0.08280 1ecxA 384 0.5393 c.67.1.3 34431 2i5gA 325 0.9066 1yixA 265 2.149 c.1.9.12 123371 1uumA 372 2.373 c.1.4.1 100010 2dr1A 386 2.373 2qulA 290 2.462 1q7zA 566 2.704 c.1.21.2,c.1.26.1 96090,96091 1k6wA 426 3.228 b.92.1.2,c.1.9.5 68236,68237 1ceo 343 3.330 2ze0A 555 3.850 1rhcA 330 4.323 c.1.16.3 97468 2v5jA 287 4.341 2ragA 417 4.490 1h5vA 304 4.527 c.1.8.3 70898 3b40A 417 4.533 1xfkA 336 4.586 c.42.1.1 115264 1ezwA 349 4.644 c.1.16.3 29558 1j6oA 268 4.660 c.1.9.12 77088 1eg5A 384 4.911 c.67.1.3 34429 1tv8A 340 6.037 c.1.28.3 107352 1zzmA 259 6.253 c.1.9.12 125911 2podA 410 7.240 1k77A 260 7.348 c.1.15.5 72096 2q8xA 331 8.023 3c8nA 356 8.074 1gw9A 388 8.164 c.1.15.3 70658 1fcdA 401 8.231 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1goxA 369 8.490 c.1.4.1 28607 1wkyA 464 8.565 b.18.1.31,c.1.8.3 120992,120993 2nzlA 392 10.83 2citA 282 11.05 c.1.8.3 130499 2cw6A 298 12.17 1ituA 369 13.30 c.1.9.7 71423 1a5mC 566 15.34 b.92.1.1,c.1.9.2 28423,29045 1f07A 321 15.65 c.1.16.3 59560 1xwyA 264 15.75 c.1.9.12 122411 1rk6A 496 16.56 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 2yxbA 161 16.64 1oneA 436 18.36 c.1.11.1,d.54.1.1 29200,38844 1ni4A 365 18.64 c.36.1.11 85728 3b9oA 440 19.90 2d1zA 436 20.02 2b81A 323 20.88 1j96A 323 21.86 c.1.7.1 71616 2hx1A 284 22.36 2gzxA 265 22.89 2al2A 436 22.92 c.1.11.1,d.54.1.1 126953,126954 1b1yA 500 23.63 c.1.8.1 28796 1s1pA 331 24.45 c.1.7.1 98350 1bf6A 291 25.38 c.1.9.3 29065 1kl1A 419 27.30 c.67.1.4 72663 1ht6A 405 27.77 b.71.1.1,c.1.8.1 83629,83630 1qumA 285 28.09 c.1.15.1 29393 1elqA 390 28.60 c.67.1.3 34436 1ccwA 137 29.45 c.23.6.1 31238 1ub3A 220 31.09 c.1.10.1 88395 2og9A 393 31.53 1zunB 434 31.87 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 2abbA 364 32.84 c.1.4.1 126517 1ek6A 348 32.88 c.2.1.2 29800 1fkx 349 33.01 1lucB 324 33.09 c.1.16.1 29548 1iu8A 206 33.09 c.56.4.1 71436 2depA 356 33.14 2pa6A 427 33.44 1edg 380 33.63 1eu8A 409 34.27 c.94.1.1 59502 2nydA 370 34.35 2rduA 387 36.16 2jg2A 422 36.35 1d2eA 397 36.38 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1muwA 386 36.43 c.1.15.3 79495 1qmeA 702 37.09 d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 2obiA 183 37.75 2o56A 407 38.52 1ed8A 449 39.15 c.76.1.1 34988 1m2kA 249 40.07 c.31.1.5 84754 1m5wA 243 41.42 c.1.24.1 84836 1bmtA 246 42.14 a.46.1.1,c.23.6.1 17757,31235 3pfk 319 42.76 1i3kA 348 42.97 c.2.1.2 61595 2iz6A 176 43.42 4xiaA 393 45.07 c.1.15.3 29439 1aj2A 282 46.18 c.1.21.1 29665 1augA 215 47.29 c.56.4.1 33798 1vjpA 394 47.68 c.2.1.3,d.81.1.3 100828,100829 1ceoA 343 48.65 c.1.8.3 28808 2nx9A 464 48.98 2rebA 352 50.33 c.37.1.11,d.48.1.1 32282,38767 1zy9A 564 50.58 b.30.5.11,c.1.8.13 125813,125814 1ra0A 430 50.65 b.92.1.2,c.1.9.5 111756,111757 1eceA 358 51.04 c.1.8.3 28813 1afsA 323 52.71 c.1.7.1 28694 1omp 370 54.23 2du2A 374 54.27 3ch0A 272 54.67 1v77A 212 55.03 c.6.3.2 108402 2f8aA 208 55.05 c.47.1.10 133119 1a0dA 440 55.30 c.1.15.3 29533 1ur1A 378 55.81 c.1.8.3 99804 1p1mA 406 55.96 b.92.1.4,c.1.9.9 87696,87697 1z45A 699 59.49 b.30.5.4,c.2.1.2 124427,124428 1a4mA 349 62.31 c.1.9.1 29014 2eplX 627 63.45 1rcuA 195 65.46 c.129.1.1 97295 1zjaA 557 65.96 1d8wA 426 66.43 c.1.15.2 29394 2b0mA 393 67.70 c.1.4.1 127644 2h1yA 321 67.80 1zhaA 267 68.55 3bc9A 599 68.72 2hdyA 440 69.04 1mdl 359 70.18 3bjsA 428 70.52 2i2wA 212 70.52 2fb2A 340 71.09 1eyeA 280 72.01 c.1.21.1 29672 1l5oA 356 73.04 c.39.1.1 77711 1ydnA 295 73.21 1z57A 339 73.67 1aj2 282 73.89 2f8lA 344 73.95 c.66.1.45 133132 2p10A 286 74.87 1hnnA 282 75.38 c.66.1.15 65895 1us0A 316 75.60 c.1.7.1 99850 2qw5A 335 77.38 1vd6A 224 78.06 c.1.18.3 119991 1o0yA 260 78.30 c.1.10.1 80756 1xbtA 193 79.09 c.37.1.24,g.39.1.14 115080,115081 1l6sA 323 80.27 c.1.10.3 73627 1wohA 305 80.33 c.42.1.1 109446 2hk0A 309 81.25 1ho1A 242 81.52 c.1.24.1 61097 1yw1A 442 81.74 c.1.16.4 124130 1pfkA 320 82.04 c.89.1.1 35575 1lroA 267 83.42 c.1.10.4 78161 1odzA 386 84.53 c.1.8.3 86889 1j2rA 199 84.66 c.33.1.3 90788 1egzA 291 85.62 c.1.8.3 28828 2a5hA 416 86.06 2pgfA 371 87.24 1f60A 458 87.68 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2gwgA 350 88.07 c.1.9.15 135805 2q4oA 215 88.57 c.129.1.1 139872