# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yxoA	267	1.35e-22		
1m65A	245	8.04e-12	c.6.3.1	84847
2anuA	255	0.000249	c.6.3.1	127058
2hnhA	910	0.000895		
2qulA	290	5.256		
1j6oA	268	6.110	c.1.9.12	77088
1zzmA	259	8.132	c.1.9.12	125911
2v5jA	287	11.31		
1q7zA	566	13.33	c.1.21.2,c.1.26.1	96090,96091
1rhcA	330	15.23	c.1.16.3	97468
1elqA	390	17.56	c.67.1.3	34436
1yixA	265	18.66	c.1.9.12	123371
1ceo	343	18.96		
2i5gA	325	19.62		
2dr1A	386	20.03		
2pgfA	371	20.12		
1qdbA	473	20.53	a.138.1.3	19688
2fb2A	340	23.65		
2nzlA	392	24.33		
1ezwA	349	25.13	c.1.16.3	29558
1w1iE	357	25.32	c.1.9.1	109051
1k6wA	426	26.75	b.92.1.2,c.1.9.5	68236,68237
1vflA	356	27.46	c.1.9.1	120041
1fkx	349	31.18		
1be1	137	31.50		
1ccwA	137	31.65	c.23.6.1	31238
1a4mA	349	32.02	c.1.9.1	29014
1s1pA	331	33.28	c.1.7.1	98350
1r30A	369	33.58	c.1.28.1	96895
3cnyA	301	33.94		
2yxbA	161	36.26		
2ragA	417	38.50		
3c8nA	356	38.92		
1j2rA	199	40.26	c.33.1.3	90788
1vjoA	393	45.27	c.67.1.3	100827
1tv8A	340	47.48	c.1.28.3	107352
1kcxA	518	50.96	b.92.1.3,c.1.9.6	90953,90954
1mi3A	322	51.59	c.1.7.1	91274
1sxjA	511	54.22	a.80.1.1,c.37.1.20	106081,106082
2obiA	183	58.22		
1d8wA	426	59.03	c.1.15.2	29394
2hk0A	309	59.59		
1xrsB	262	60.16	c.23.6.1,d.230.4.1	115884,115885
1byuA	216	61.53	c.37.1.8	32032
1qtwA	285	62.65	c.1.15.1	29392
1tif	78	63.49		
2b81A	323	63.98		
2gzxA	265	67.52		
1aj2	282	68.93		
1f60A	458	68.99	b.43.3.1,b.44.1.1,c.37.1.8	25705,25745,32140
1o1yA	239	69.13	c.23.16.1	86554
1aj2A	282	70.41	c.1.21.1	29665
1ituA	369	70.54	c.1.9.7	71423
1k77A	260	73.93	c.1.15.5	72096
1ekxA	311	74.33	c.78.1.1,c.78.1.1	35088,35089
1fh9A	312	78.93	c.1.8.3	28913
1zgdA	312	79.46		
2oczA	231	79.53		
1kl1A	419	80.90	c.67.1.4	72663
2f8aA	208	81.69	c.47.1.10	133119
2rc5A	314	82.30		
2amxA	376	85.86	c.1.9.1	127024
1g0cA	364	87.42	c.1.8.3	60165
1rk6A	496	88.52	b.92.1.6,b.92.1.6,c.1.9.11	97599,97600,97601