# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 4.07e-24 1m65A 245 1.28e-13 c.6.3.1 84847 2anuA 255 0.000219 c.6.3.1 127058 2hnhA 910 0.000522 2qulA 290 1.285 1zzmA 259 2.813 c.1.9.12 125911 1j6oA 268 3.189 c.1.9.12 77088 1qumA 285 3.811 c.1.15.1 29393 1fh9A 312 4.642 c.1.8.3 28913 1yixA 265 4.770 c.1.9.12 123371 2gzxA 265 5.168 2pgfA 371 8.568 1tz9A 367 8.573 c.1.15.6 107466 2hk0A 309 9.453 1k77A 260 10.26 c.1.15.5 72096 2o14A 375 10.84 1i60A 278 10.91 c.1.15.4 71118 2podA 410 11.14 1zgdA 312 11.28 2i5gA 325 11.60 2ajrA 331 11.95 c.72.1.1 126892 2v5jA 287 12.17 2jg1A 330 12.31 2ragA 417 14.26 3cnyA 301 15.03 1vflA 356 15.76 c.1.9.1 120041 1nq6A 302 15.93 c.1.8.3 92046 2f02A 323 16.99 c.72.1.1 132649 1ccwA 137 17.08 c.23.6.1 31238 1xwyA 264 17.77 c.1.9.12 122411 1a4mA 349 18.19 c.1.9.1 29014 1xyzA 347 20.16 c.1.8.3 28804 2obiA 183 22.51 2pozA 392 23.00 2fb2A 340 24.06 2yxbA 161 24.15 1fkx 349 25.17 1v77A 212 28.47 c.6.3.2 108402 2bgsA 344 29.69 1w1iE 357 29.95 c.1.9.1 109051 1lqaA 346 30.99 c.1.7.1 84674 1v0lA 313 33.38 c.1.8.3 108207 1d8wA 426 33.44 c.1.15.2 29394 2ggsA 273 34.44 1vbuA 328 34.65 c.1.8.3 119963 2ao0A 324 34.94 2z1nA 260 35.40 1k6wA 426 36.25 b.92.1.2,c.1.9.5 68236,68237 2dr3A 247 36.55 1ii7A 333 36.77 d.159.1.4 62415 1exbA 332 37.02 c.1.7.1 28666 1j2rA 199 37.22 c.33.1.3 90788 2pp3A 398 40.93 1vjgA 218 41.04 c.23.10.6 100810 1qrqA 325 41.95 c.1.7.1 28667 2q0dA 353 42.44 2gwgA 350 42.97 c.1.9.15 135805 2hejA 323 43.96 1eq2A 310 45.13 c.2.1.2 29814 3b40A 417 45.16 1tv8A 340 48.05 c.1.28.3 107352 1rhcA 330 48.10 c.1.16.3 97468 1a0dA 440 48.34 c.1.15.3 29533 1s1pA 331 49.91 c.1.7.1 98350 3buvA 326 51.43 1hw6A 278 51.56 c.1.7.1 61296 1im5A 180 51.68 c.33.1.3 66211 1v2dA 381 51.74 c.67.1.1 108281 1lt8A 406 52.51 c.1.26.1 78186 1qtwA 285 52.65 c.1.15.1 29392 1uteA 313 53.24 d.159.1.1 42078 2amxA 376 56.85 c.1.9.1 127024 2oz8A 389 57.80 1yxyA 234 58.66 c.1.2.5 124203 2og9A 393 59.05 2bp1A 360 60.22 1j96A 323 60.24 c.1.7.1 71616 1oltA 457 60.57 c.1.28.2 93334 1xyfA 436 61.08 b.42.2.1,c.1.8.3 25577,28909 1q7zA 566 62.15 c.1.21.2,c.1.26.1 96090,96091 1eljA 381 63.73 c.94.1.1 35791 2qgyA 391 64.39 5reqA 727 65.73 c.1.19.1,c.23.6.1 29632,31259 2bvwA 362 65.91 c.6.1.1 30666 2q8xA 331 67.09 1s8eA 333 69.09 d.159.1.4 105368 1p4cA 380 69.96 c.1.4.1 94100 2vc7A 314 71.34 2d1zA 436 72.37 1mdlA 359 72.69 c.1.11.2,d.54.1.1 29247,38891 1fds 327 72.95 1vbjA 281 73.36 1u9iA 519 75.84 c.37.1.11,c.37.1.11 119637,119638 2i2wA 212 77.63 2fg1A 158 78.12 c.50.1.2 133400 1tk9A 188 78.64 c.80.1.3 107082 2rebA 352 78.90 c.37.1.11,d.48.1.1 32282,38767 1gvfA 286 80.20 c.1.10.2 70599 1ur1A 378 80.53 c.1.8.3 99804 2dh2A 424 81.67 1yb1A 272 84.87 c.2.1.2 116599 1h1yA 228 85.77 c.1.2.2 76506 1iu8A 206 86.57 c.56.4.1 71436 1ujqA 305 88.19 c.1.12.7 99463