# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 7.37e-27 1m65A 245 1.93e-14 c.6.3.1 84847 2hnhA 910 6.56e-05 2anuA 255 0.000148 c.6.3.1 127058 2qulA 290 0.1479 1yixA 265 0.9833 c.1.9.12 123371 1j6oA 268 1.075 c.1.9.12 77088 1zzmA 259 1.231 c.1.9.12 125911 1k6wA 426 1.727 b.92.1.2,c.1.9.5 68236,68237 2gzxA 265 2.249 3cnyA 301 3.554 1qumA 285 4.174 c.1.15.1 29393 1k77A 260 4.665 c.1.15.5 72096 3b40A 417 4.799 1qtwA 285 5.548 c.1.15.1 29392 1fh9A 312 5.795 c.1.8.3 28913 2ragA 417 5.858 2pgfA 371 5.962 2i5gA 325 6.484 2fb2A 340 6.680 2hk0A 309 9.143 1v77A 212 10.50 c.6.3.2 108402 1vflA 356 10.50 c.1.9.1 120041 1i60A 278 10.62 c.1.15.4 71118 2yxbA 161 10.79 2podA 410 11.33 2v5jA 287 13.91 1xwyA 264 14.41 c.1.9.12 122411 1s1pA 331 14.90 c.1.7.1 98350 1qcwA 410 15.63 c.1.4.1 28622 2o14A 375 15.74 1a4mA 349 16.41 c.1.9.1 29014 1ccwA 137 17.76 c.23.6.1 31238 1tv8A 340 17.91 c.1.28.3 107352 1eq2A 310 20.34 c.2.1.2 29814 1j2rA 199 20.53 c.33.1.3 90788 1zgdA 312 21.03 1ituA 369 21.30 c.1.9.7 71423 1fkx 349 22.31 1eljA 381 22.67 c.94.1.1 35791 1j96A 323 23.06 c.1.7.1 71616 1nq6A 302 23.24 c.1.8.3 92046 2obiA 183 23.56 2i2xB 258 25.09 1vjgA 218 25.45 c.23.10.6 100810 1p4cA 380 26.57 c.1.4.1 94100 1exbA 332 27.69 c.1.7.1 28666 2jg1A 330 27.79 1d8wA 426 28.02 c.1.15.2 29394 1zhaA 267 28.53 2gwgA 350 28.59 c.1.9.15 135805 1oltA 457 29.08 c.1.28.2 93334 2dr3A 247 29.89 2gdjA 264 31.04 c.37.1.11 135018 1h1yA 228 31.47 c.1.2.2 76506 2hejA 323 32.81 1tx2A 297 34.60 c.1.21.1 107420 1lqaA 346 34.65 c.1.7.1 84674 2vc7A 314 34.80 2iswA 323 35.66 1w1iE 357 36.31 c.1.9.1 109051 1ra0A 430 36.37 b.92.1.2,c.1.9.5 111756,111757 1oc7A 364 38.59 c.6.1.1 86794 1augA 215 38.65 c.56.4.1 33798 2qgyA 391 39.17 2ajrA 331 40.35 c.72.1.1 126892 1y80A 210 41.47 3c8nA 356 41.92 1mdl 359 41.96 2oz8A 389 42.03 4xiaA 393 42.64 c.1.15.3 29439 2amxA 376 44.33 c.1.9.1 127024 1frb 315 44.66 1ii7A 333 44.75 d.159.1.4 62415 2gokA 429 44.76 1vjoA 393 44.86 c.67.1.3 100827 2b81A 323 45.63 1iu8A 206 46.33 c.56.4.1 71436 2pp3A 398 49.90 1goxA 369 50.41 c.1.4.1 28607 1q7zA 566 50.62 c.1.21.2,c.1.26.1 96090,96091 2bvwA 362 52.11 c.6.1.1 30666 2i1qA 322 52.61 a.60.4.1,c.37.1.11 136984,136985 3buvA 326 53.96 1gw9A 388 54.12 c.1.15.3 70658 2iucA 375 54.71 4kbpA 432 55.85 b.1.12.1,d.159.1.1 22345,42064 1jubA 311 56.35 c.1.4.1 90908 1a2zA 220 56.39 c.56.4.1 33794 1be1 137 56.54 1qrqA 325 57.15 c.1.7.1 28667 1dysA 348 57.90 c.6.1.1 30669 1rk6A 496 57.97 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1im5A 180 58.81 c.33.1.3 66211 2pozA 392 59.65 1vr6A 350 60.06 c.1.10.4 120439 1qgoA 264 60.16 c.92.1.2 35596 1eyeA 280 60.39 c.1.21.1 29672 1wohA 305 60.81 c.42.1.1 109446 1xfkA 336 61.29 c.42.1.1 115264 1xrsB 262 62.08 c.23.6.1,d.230.4.1 115884,115885 1vbuA 328 62.18 c.1.8.3 119963 1p1mA 406 63.12 b.92.1.4,c.1.9.9 87696,87697 1qwkA 317 64.07 c.1.7.1 96482 2q8xA 331 65.43 2f02A 323 66.20 c.72.1.1 132649 2rebA 352 67.11 c.37.1.11,d.48.1.1 32282,38767 2nzlA 392 68.29 2dorA 311 68.42 c.1.4.1 28593 1h49A 512 68.48 c.1.8.4 83477 1v72A 356 68.68 c.67.1.1 119860 1j6pA 418 68.72 b.92.1.4,c.1.9.9 77089,77090 1oroA 213 69.53 c.61.1.1 34093 5reqA 727 70.70 c.1.19.1,c.23.6.1 29632,31259 1xviA 275 70.78 c.108.1.10 116088 1mdlA 359 71.55 c.1.11.2,d.54.1.1 29247,38891 2f6kA 307 72.62 c.1.9.15 133047 1tz9A 367 72.68 c.1.15.6 107466 2a5hA 416 72.84 1afsA 323 74.30 c.1.7.1 28694 2bgsA 344 74.35 1ur1A 378 74.73 c.1.8.3 99804 1r30A 369 76.35 c.1.28.1 96895 2al2A 436 77.22 c.1.11.1,d.54.1.1 126953,126954 2c7pA 327 77.82 c.66.1.26 130080 2djlA 314 78.91 2z1nA 260 79.01 1bf6A 291 79.69 c.1.9.3 29065 2bp1A 360 79.72 2e6fA 314 80.40 2og9A 393 82.41 1lroA 267 82.44 c.1.10.4 78161 1t94A 459 83.48 d.240.1.1,e.8.1.7 106701,106702 1dfoA 417 84.83 c.67.1.4 34480 1gveA 327 84.85 c.1.7.1 70597 1fds 327 85.09 1el3A 316 85.18 c.1.7.1 28672 2d1zA 436 85.34 1ltdA 506 85.63 c.1.4.1,d.120.1.1 28618,41086 1m6iA 493 85.92 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1g55A 343 88.03 c.66.1.26 34247 1v0lA 313 88.27 c.1.8.3 108207 1rh9A 373 88.58 c.1.8.3 118773 1kbjA 412 88.95 c.1.4.1 72280 1tkkA 366 89.96 c.1.11.2,d.54.1.1 107089,107090