# List of top-scoring protein chains for T0440.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yxoA	267	2.98e-20		
1m65A	245	6.99e-19	c.6.3.1	84847
2hpiA	1220	5.93e-11		
2anuA	255	1.73e-08	c.6.3.1	127058
2hnhA	910	9.35e-05		
2hqaA	917	9.68e-05		
2p1jA	186	0.02965		
1zzmA	259	1.802	c.1.9.12	125911
1f07A	321	2.725	c.1.16.3	59560
1z69A	327	3.331		
2amxA	376	3.351	c.1.9.1	127024
2ogjA	417	3.366		
1ezwA	349	5.204	c.1.16.3	29558
2pgfA	371	8.254		
3cjpA	272	10.35		
1rypG	244	10.37	d.153.1.4	41938
3bdmF	287	10.57		
1zq1A	438	10.66	b.38.3.1,c.88.1.1	125489,125490
1wg8A	285	10.66	a.60.13.1,c.66.1.23	114605,114606
1z7qG	288	10.75	d.153.1.4	124654
1g0uF	248	11.51	d.153.1.4	41951
1ojxA	263	12.22	c.1.10.1	93164
1z6tA	591	13.99		
1w8rA	263	15.07	c.1.10.1	120734
2a4aA	281	15.19	c.1.10.1	126150
1pn3A	404	16.33	c.87.1.5	94938
1gynA	358	16.45	c.1.10.2	83385
2enxA	310	16.66		
1w8sA	263	17.07	c.1.10.1	120744
1dosA	358	18.40	c.1.10.2	29175
2vhlA	396	19.03		
1jndA	420	22.77	c.1.8.5,d.26.3.1	71757,71758
2rdbA	498	23.48		
1t0qA	498	24.89	a.25.1.2	106220
1t3lA	337	25.03	b.34.2.1,c.37.1.1	106358,106359
2nloA	302	26.79		
1zkpA	268	29.36	d.157.1.9	125205
2incA	491	29.90	a.25.1.2	137524
1t5iA	172	30.01	c.37.1.19	106450
1k20A	310	31.15	c.107.1.1	68027
1tkkA	366	31.96	c.1.11.2,d.54.1.1	107089,107090
3be7A	408	32.77		
2gzxA	265	33.52		
1fkxA	349	35.12	c.1.9.1	29018
2qs8A	418	38.93		
1i74A	309	39.19	c.107.1.1	61867
2q8uA	336	39.75		
3ch0A	272	40.03		
2pz0A	252	40.55		
1fqeA	331	42.79	c.94.1.2	59988
1yixA	265	43.57	c.1.9.12	123371
2a3nA	355	44.52		
1a4mA	349	46.93	c.1.9.1	29014
1xxxA	303	47.46	c.1.10.1	122433
1m5wA	243	47.79	c.1.24.1	84836
1ho1A	242	48.84	c.1.24.1	61097
2adaA	352	49.70	c.1.9.1	29027
1m53A	570	49.81	b.71.1.1,c.1.8.1	84805,84806
1g652	196	51.47		
1uioA	349	53.78	c.1.9.1	29021
1fkwA	349	53.93	c.1.9.1	29019
1iruD	248	54.37	d.153.1.4	71355
1rypH	205	55.95	d.153.1.4	41876
1uipA	349	59.96	c.1.9.1	29022
1bkjA	240	61.32	d.90.1.1	40243
1q7rA	219	62.77	c.23.16.1	96054
2qdxA	257	65.38		
1rpxA	230	69.25	c.1.2.2	28536
1s4eA	352	69.72	d.14.1.5,d.58.26.7	98477,98478
2d8mA	129	70.69		
1nrwA	288	71.59	c.108.1.10	86128
1w6tA	444	72.51	c.1.11.1,d.54.1.1	120670,120671
1wppA	311	72.62	c.107.1.1	114828
2p0oA	372	73.03		
2h3hA	313	74.79		
2etjA	250	75.06	c.55.3.1	132360
1eywA	331	77.47	c.1.9.3	29057
1i0dA	332	77.73	c.1.9.3	61487
1jgmA	336	78.54	c.1.9.3	62953
2p2dA	358	78.62		
1dpmA	329	78.67	c.1.9.3	29062
2o4qA	331	79.07		
1ziwA	680	79.36		
1ptaA	327	79.38	c.1.9.3	29064
2himA	358	81.16		
1xezA	721	81.76		
2pweA	556	82.64		
2pwhA	556	83.88		
1rhcA	330	84.16	c.1.16.3	97468
2pk0A	250	84.66		
1zjaA	557	84.97		
2pwfA	556	85.79		
3boeA	210	86.06		
1zsyA	357	87.43		
2r8cA	426	89.02