# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 2.52e-13 1m65A 245 2.80e-10 c.6.3.1 84847 2anuA 255 5.85e-08 c.6.3.1 127058 1v77A 212 4.74e-05 c.6.3.2 108402 2hnhA 910 6.98e-05 1vflA 356 0.5650 c.1.9.1 120041 2ffiA 288 0.5955 c.1.9.15 133385 1j6oA 268 1.249 c.1.9.12 77088 2ob3A 330 1.470 1i60A 278 2.746 c.1.15.4 71118 1gkrA 458 3.115 b.92.1.3,c.1.9.6 70251,70252 2qt3A 403 3.957 2qahA 303 4.006 2vc7A 314 4.132 1zzmA 259 4.431 c.1.9.12 125911 1muwA 386 4.576 c.1.15.3 79495 1qtwA 285 4.583 c.1.15.1 29392 1gkpA 458 4.863 b.92.1.3,c.1.9.6 70231,70232 1yw1A 442 4.926 c.1.16.4 124130 1k77A 260 5.058 c.1.15.5 72096 1xwyA 264 5.395 c.1.9.12 122411 1a0cA 438 6.299 c.1.15.3 29529 2gzxA 265 6.380 1yixA 265 7.500 c.1.9.12 123371 1a0dA 440 8.511 c.1.15.3 29533 2gokA 429 8.756 3c86A 328 8.969 2pgfA 371 9.165 2opjA 327 9.195 1tvlA 454 9.305 c.1.16.4 107366 1n7kA 234 9.677 c.1.10.1 85374 2z00A 426 10.42 2g0wA 296 10.47 c.1.15.4 134503 1i0dA 332 10.86 c.1.9.3 61487 1o0yA 260 11.58 c.1.10.1 80756 1f07A 321 12.84 c.1.16.3 59560 2q02A 272 13.65 3b9oA 440 13.71 2i7gA 376 15.14 3ciwA 348 18.39 2qw5A 335 18.95 1bf6A 291 18.99 c.1.9.3 29065 1ur4A 399 19.80 c.1.8.3 113402 1hw6A 278 21.09 c.1.7.1 61296 1rvkA 382 21.46 c.1.11.2,d.54.1.1 97928,97929 2igiA 180 23.52 1zgdA 312 24.24 2d5rA 252 24.27 1vbjA 281 25.12 2i57A 438 25.63 1y97A 238 25.81 c.55.3.5 122773 1j96A 323 29.71 c.1.7.1 71616 1ybqB 390 30.98 3be7A 408 31.38 1us0A 316 31.61 c.1.7.1 99850 2qv5A 261 31.91 2omkA 231 32.80 3cjpA 272 33.35 1vc4A 254 34.97 c.1.2.4 100557 2csuA 457 35.09 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2cftA 298 35.17 1oltA 457 35.95 c.1.28.2 93334 2v8pA 271 36.48 1s1pA 331 37.77 c.1.7.1 98350 1nqkA 381 38.21 c.1.16.4 92050 1gveA 327 38.42 c.1.7.1 70597 2qpxA 376 38.46 2ehhA 294 38.55 2icsA 379 38.82 b.92.1.8,c.1.9.14 137241,137242 2fp4B 395 40.09 c.23.4.1,d.142.1.4 133897,133898 1m5wA 243 40.24 c.1.24.1 84836 2f6kA 307 41.15 c.1.9.15 133047 2ox4A 403 41.21 1fxxA 482 42.00 c.55.3.5 33726 2qulA 290 43.70 2b81A 323 44.23 1h1yA 228 44.69 c.1.2.2 76506 3cnyA 301 45.38 1ytaA 180 47.08 c.55.3.5 124002 2q01A 497 47.23 2purA 292 48.68 2r8wA 332 49.45 1rrmA 386 49.85 e.22.1.2 105081 1zuaX 317 51.75 2v9dA 343 52.07 2g3fA 421 52.64 1lqaA 346 52.96 c.1.7.1 84674 1ny1A 240 53.05 c.6.2.3 86395 1bg4A 302 53.11 c.1.8.3 28806 2cygA 312 54.68 c.1.8.3 131025 1qwkA 317 54.73 c.1.7.1 96482 2imrA 420 55.25 3c8nA 356 56.05 2z1mA 345 56.08 1toaA 313 56.31 c.92.2.2 35598 1vbuA 328 56.74 c.1.8.3 119963 1lucA 355 57.97 c.1.16.1 29547 2oa8A 233 57.99 2hk0A 309 58.31 2q09A 416 59.03 1frb 315 59.42 2hejA 323 61.22 2qdeA 397 62.80 2fliA 220 63.72 c.1.2.2 133714 2hbvA 334 65.34 c.1.9.15 136320 1yeyA 444 65.91 c.1.11.2,d.54.1.1 116664,116665 2pajA 492 65.95 1zp4A 304 67.34 1vcvA 226 67.51 c.1.10.1 119988 2nlyA 245 68.29 c.6.2.7 138364 2puzA 419 68.35 1nnsA 326 69.43 c.88.1.1 85910 2nqlA 388 70.13 2obwA 258 70.51 2atsA 292 71.30 c.1.10.1 127306 1yc5A 246 71.46 c.31.1.5 122910 1qgoA 264 72.26 c.92.1.2 35596 2qedA 258 72.39 1ra0A 430 74.18 b.92.1.2,c.1.9.5 111756,111757 1iukA 140 74.58 c.2.1.8 83712 1yacA 208 75.24 c.33.1.3 31757 1j5sA 463 75.97 c.1.9.8 71580 2gl5A 410 76.26 c.1.11.2,d.54.1.1 135336,135337 1thfD 253 76.80 c.1.2.1 28535 1o2dA 371 77.40 e.22.1.2 86591 1k0fA 277 77.53 c.92.2.2 71974 2depA 356 77.83 1v5xA 203 78.22 c.1.2.4 100377 2f96A 224 78.34 c.55.3.5 133153 1ezwA 349 78.64 c.1.16.3 29558 2pcqA 283 79.46 1k47A 337 79.49 d.14.1.5,d.58.26.4 72040,72041 2gwnA 452 79.59 2a0nA 265 79.69 c.1.2.1 125961 2amxA 376 81.19 c.1.9.1 127024 1e8cA 498 82.01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1iowA 306 82.33 c.30.1.2,d.142.1.1 31713,41481 1tv8A 340 82.50 c.1.28.3 107352 1q7zA 566 82.86 c.1.21.2,c.1.26.1 96090,96091 1o5kA 306 82.90 c.1.10.1 92504 2rfgA 297 83.36 2i9uA 439 83.53 2r6oA 294 87.72 2ojpA 292 87.93 2a6pA 208 89.01 2hneA 436 89.13