# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 5.20e-15 1m65A 245 1.12e-11 c.6.3.1 84847 2anuA 255 3.26e-09 c.6.3.1 127058 1v77A 212 1.60e-06 c.6.3.2 108402 2hnhA 910 1.56e-05 1j6oA 268 0.6554 c.1.9.12 77088 2ob3A 330 0.7262 1vflA 356 1.006 c.1.9.1 120041 1qtwA 285 1.629 c.1.15.1 29392 2qahA 303 1.650 2gzxA 265 1.692 2ffiA 288 2.027 c.1.9.15 133385 1xwyA 264 2.291 c.1.9.12 122411 1i60A 278 2.544 c.1.15.4 71118 1muwA 386 2.807 c.1.15.3 79495 2vc7A 314 2.899 1a0dA 440 3.195 c.1.15.3 29533 1a0cA 438 3.767 c.1.15.3 29529 3c86A 328 4.682 1gkrA 458 5.454 b.92.1.3,c.1.9.6 70251,70252 1zzmA 259 5.576 c.1.9.12 125911 2i7gA 376 8.259 1yw1A 442 9.125 c.1.16.4 124130 1fxxA 482 10.02 c.55.3.5 33726 2qw5A 335 10.27 1o0yA 260 10.33 c.1.10.1 80756 2z00A 426 10.35 2qt3A 403 10.53 1gkpA 458 10.79 b.92.1.3,c.1.9.6 70231,70232 2igiA 180 11.71 1y97A 238 12.34 c.55.3.5 122773 2pajA 492 12.41 1ybqB 390 14.35 2g0wA 296 15.69 c.1.15.4 134503 2icsA 379 15.79 b.92.1.8,c.1.9.14 137241,137242 1k77A 260 15.85 c.1.15.5 72096 1vbjA 281 17.32 2opjA 327 17.81 1ur4A 399 18.58 c.1.8.3 113402 2oa8A 233 19.93 3be7A 408 20.37 2d5rA 252 21.78 1i0dA 332 22.06 c.1.9.3 61487 1toaA 313 22.13 c.92.2.2 35598 1yixA 265 22.53 c.1.9.12 123371 2omkA 231 23.33 2g3fA 421 23.51 2gokA 429 23.75 1vbuA 328 23.77 c.1.8.3 119963 1tvlA 454 24.49 c.1.16.4 107366 3cnyA 301 24.92 1usgA 346 27.52 c.93.1.1 99864 1bf6A 291 27.65 c.1.9.3 29065 1ytaA 180 29.42 c.55.3.5 124002 1k0fA 277 29.60 c.92.2.2 71974 1oltA 457 30.04 c.1.28.2 93334 1yacA 208 30.18 c.33.1.3 31757 3b9oA 440 31.08 3ciwA 348 32.44 2q02A 272 34.14 1f07A 321 34.29 c.1.16.3 59560 2depA 356 37.87 2csuA 457 38.85 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1j96A 323 42.60 c.1.7.1 71616 1g5bA 221 42.71 d.159.1.3 60261 2i57A 438 43.41 1q7zA 566 44.56 c.1.21.2,c.1.26.1 96090,96091 1rhcA 330 45.62 c.1.16.3 97468 1hw6A 278 46.01 c.1.7.1 61296 2pgfA 371 47.58 1jvnA 555 48.56 c.1.2.1,c.23.16.1 67355,67356 1rrmA 386 49.11 e.22.1.2 105081 2hbvA 334 49.48 c.1.9.15 136320 2nxfA 322 51.39 1rvkA 382 53.43 c.1.11.2,d.54.1.1 97928,97929 1ct5A 256 55.15 c.1.6.2 28663 1bg4A 302 56.19 c.1.8.3 28806 1uc8A 280 56.93 c.30.1.6,d.142.1.7 99165,99166 2z1mA 345 58.06 2q8xA 331 58.15 1e8cA 498 60.00 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2i5gA 325 60.14 1ujpA 271 60.72 c.1.2.4 99462 1n7kA 234 61.27 c.1.10.1 85374 2ihtA 573 61.35 1nqkA 381 61.81 c.1.16.4 92050 1akoA 268 62.10 d.151.1.1 41779 1us0A 316 64.05 c.1.7.1 99850 1zczA 464 65.44 c.24.1.3,c.97.1.4 124923,124924 1zp4A 304 66.68 3bdiA 207 66.93 1iowA 306 67.72 c.30.1.2,d.142.1.1 31713,41481 2pceA 386 68.23 1z15A 344 68.24 1bouB 302 70.06 c.56.6.1 33859 1f6yA 262 70.21 c.1.21.2 29673 2r8wA 332 70.31 1gqnA 252 70.59 c.1.10.1 90514 1qwkA 317 71.55 c.1.7.1 96482 1vc4A 254 73.20 c.1.2.4 100557 2qxfA 482 73.39 2f96A 224 75.72 c.55.3.5 133153 1qgoA 264 76.65 c.92.1.2 35596 2fp4B 395 77.44 c.23.4.1,d.142.1.4 133897,133898 1ezwA 349 78.73 c.1.16.3 29558 1wg8A 285 78.97 a.60.13.1,c.66.1.23 114605,114606 2hy1A 280 79.47 2imrA 420 81.11 2pg3A 232 81.42 2hbjA 410 81.50 a.60.8.4,c.55.3.5 136311,136312 2cygA 312 82.99 c.1.8.3 131025 3c8nA 356 84.74 1twiA 434 85.61 b.49.2.3,c.1.6.1 107399,107400 2qdeA 397 86.21 1zgdA 312 86.49 2atsA 292 87.84 c.1.10.1 127306 1tv8A 340 88.58 c.1.28.3 107352 2a5hA 416 89.16 2puzA 419 89.18 1o2dA 371 89.93 e.22.1.2 86591