# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.51e-14 1m65A 245 1.71e-11 c.6.3.1 84847 2anuA 255 6.82e-09 c.6.3.1 127058 1v77A 212 3.12e-06 c.6.3.2 108402 2hnhA 910 2.71e-05 1j6oA 268 0.6471 c.1.9.12 77088 2ob3A 330 0.6992 1vflA 356 1.251 c.1.9.1 120041 2qahA 303 1.324 1qtwA 285 1.477 c.1.15.1 29392 2ffiA 288 1.783 c.1.9.15 133385 2gzxA 265 2.257 1muwA 386 2.293 c.1.15.3 79495 1xwyA 264 2.316 c.1.9.12 122411 1a0dA 440 2.485 c.1.15.3 29533 1i60A 278 3.081 c.1.15.4 71118 1a0cA 438 3.755 c.1.15.3 29529 2vc7A 314 3.763 1gkrA 458 4.962 b.92.1.3,c.1.9.6 70251,70252 3c86A 328 5.150 1o0yA 260 7.523 c.1.10.1 80756 1gkpA 458 8.131 b.92.1.3,c.1.9.6 70231,70232 1zzmA 259 8.273 c.1.9.12 125911 2qw5A 335 8.512 2qt3A 403 10.10 2i7gA 376 10.22 1yw1A 442 10.99 c.1.16.4 124130 2pajA 492 11.16 2z00A 426 11.49 1fxxA 482 12.05 c.55.3.5 33726 2g0wA 296 13.44 c.1.15.4 134503 2igiA 180 13.79 1y97A 238 14.24 c.55.3.5 122773 2opjA 327 15.84 1vbjA 281 16.27 1k77A 260 16.35 c.1.15.5 72096 2icsA 379 16.35 b.92.1.8,c.1.9.14 137241,137242 3be7A 408 16.50 2gokA 429 16.94 1ur4A 399 18.04 c.1.8.3 113402 1ybqB 390 20.74 3cnyA 301 20.76 1vbuA 328 20.92 c.1.8.3 119963 1yixA 265 21.80 c.1.9.12 123371 3ciwA 348 23.05 1toaA 313 23.50 c.92.2.2 35598 1tvlA 454 23.72 c.1.16.4 107366 2omkA 231 24.77 2oa8A 233 24.99 1usgA 346 25.94 c.93.1.1 99864 3b9oA 440 26.19 1bf6A 291 26.35 c.1.9.3 29065 2d5rA 252 26.70 1k0fA 277 27.48 c.92.2.2 71974 2depA 356 28.45 1yacA 208 29.80 c.33.1.3 31757 1ytaA 180 32.39 c.55.3.5 124002 1oltA 457 32.60 c.1.28.2 93334 1g5bA 221 33.23 d.159.1.3 60261 1j96A 323 33.37 c.1.7.1 71616 1hw6A 278 33.80 c.1.7.1 61296 2i57A 438 36.89 1f07A 321 36.92 c.1.16.3 59560 1rhcA 330 37.11 c.1.16.3 97468 2q02A 272 37.50 2csuA 457 38.24 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1i0dA 332 38.25 c.1.9.3 61487 1q7zA 566 38.82 c.1.21.2,c.1.26.1 96090,96091 2g3fA 421 39.36 1tv8A 340 44.42 c.1.28.3 107352 2hbvA 334 44.68 c.1.9.15 136320 2pgfA 371 46.02 1zczA 464 46.53 c.24.1.3,c.97.1.4 124923,124924 1jvnA 555 46.84 c.1.2.1,c.23.16.1 67355,67356 1w8sA 263 47.14 c.1.10.1 120744 1n7kA 234 48.25 c.1.10.1 85374 1q6zA 528 48.49 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1bg4A 302 49.37 c.1.8.3 28806 2ihtA 573 50.83 1us0A 316 52.50 c.1.7.1 99850 1rrmA 386 54.07 e.22.1.2 105081 2pceA 386 54.47 1ct5A 256 55.96 c.1.6.2 28663 1rvkA 382 56.92 c.1.11.2,d.54.1.1 97928,97929 1vc4A 254 56.93 c.1.2.4 100557 1qgoA 264 56.95 c.92.1.2 35596 2cygA 312 58.20 c.1.8.3 131025 2qdeA 397 59.73 2q8xA 331 60.56 1ujpA 271 61.00 c.1.2.4 99462 2fb2A 340 61.17 1gqnA 252 63.10 c.1.10.1 90514 1nqkA 381 63.81 c.1.16.4 92050 1e8cA 498 64.11 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1z15A 344 64.44 2imrA 420 64.65 1qwkA 317 64.95 c.1.7.1 96482 2z1mA 345 65.04 2qv5A 261 67.47 1wg8A 285 67.48 a.60.13.1,c.66.1.23 114605,114606 1y44A 320 69.25 d.157.1.7 122608 1ra0A 430 69.62 b.92.1.2,c.1.9.5 111756,111757 2nxfA 322 69.84 1gveA 327 71.36 c.1.7.1 70597 3bdiA 207 73.04 2puzA 419 73.35 1s1pA 331 73.44 c.1.7.1 98350 1zgdA 312 73.95 2cftA 298 74.00 3ch0A 272 75.55 2qxfA 482 76.63 3bofA 566 77.11 1r85A 379 77.43 c.1.8.3 104839 1f6yA 262 78.60 c.1.21.2 29673 2r8wA 332 78.79 2i5gA 325 79.26 1rvgA 305 80.66 c.1.10.2 97920 1zp4A 304 83.60 2yvdA 431 83.77 2hejA 323 84.51 2obwA 258 86.20 1yc5A 246 87.00 c.31.1.5 122910 1dxeA 256 87.41 c.1.12.5 29310 2nlyA 245 87.46 c.6.2.7 138364 2pg3A 232 88.72 2o55A 258 88.91