# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yxoA	267	4.45e-15		
1m65A	245	7.55e-12	c.6.3.1	84847
2anuA	255	3.37e-09	c.6.3.1	127058
1v77A	212	1.76e-06	c.6.3.2	108402
2hnhA	910	1.91e-05		
2ob3A	330	0.5982		
1j6oA	268	0.6189	c.1.9.12	77088
2qahA	303	1.139		
2ffiA	288	1.507	c.1.9.15	133385
1vflA	356	1.710	c.1.9.1	120041
2gzxA	265	2.137		
1muwA	386	2.261	c.1.15.3	79495
1a0dA	440	2.363	c.1.15.3	29533
1xwyA	264	2.405	c.1.9.12	122411
1qtwA	285	2.486	c.1.15.1	29392
1i60A	278	2.885	c.1.15.4	71118
1a0cA	438	3.237	c.1.15.3	29529
2vc7A	314	3.292		
1gkrA	458	4.620	b.92.1.3,c.1.9.6	70251,70252
3c86A	328	5.562		
2qt3A	403	7.617		
1fxxA	482	7.909	c.55.3.5	33726
1o0yA	260	7.964	c.1.10.1	80756
2z00A	426	8.641		
1yw1A	442	8.984	c.1.16.4	124130
1zzmA	259	9.333	c.1.9.12	125911
1gkpA	458	9.427	b.92.1.3,c.1.9.6	70231,70232
2i7gA	376	9.695		
1y97A	238	10.10	c.55.3.5	122773
2qw5A	335	10.21		
2igiA	180	12.77		
2pajA	492	12.80		
1ur4A	399	13.16	c.1.8.3	113402
2g0wA	296	15.70	c.1.15.4	134503
1vbjA	281	17.22		
1k77A	260	17.95	c.1.15.5	72096
1ybqB	390	18.34		
2opjA	327	18.46		
2oa8A	233	18.85		
2omkA	231	21.29		
2icsA	379	21.48	b.92.1.8,c.1.9.14	137241,137242
3cnyA	301	22.21		
2gokA	429	22.85		
2d5rA	252	22.87		
3be7A	408	23.68		
1vbuA	328	24.71	c.1.8.3	119963
1yixA	265	25.08	c.1.9.12	123371
2depA	356	25.99		
1bf6A	291	26.17	c.1.9.3	29065
1toaA	313	27.78	c.92.2.2	35598
3b9oA	440	28.46		
1oltA	457	28.53	c.1.28.2	93334
1ytaA	180	29.12	c.55.3.5	124002
1f07A	321	29.14	c.1.16.3	59560
1usgA	346	29.18	c.93.1.1	99864
3ciwA	348	29.71		
1g5bA	221	30.08	d.159.1.3	60261
1tvlA	454	30.14	c.1.16.4	107366
1k0fA	277	30.31	c.92.2.2	71974
1i0dA	332	32.22	c.1.9.3	61487
2hbvA	334	33.15	c.1.9.15	136320
1yacA	208	34.13	c.33.1.3	31757
1rhcA	330	34.39	c.1.16.3	97468
2g3fA	421	39.88		
2q02A	272	43.07		
2ihtA	573	43.18		
1hw6A	278	46.20	c.1.7.1	61296
2csuA	457	46.33	c.2.1.8,c.23.4.1,c.23.4.1	130781,130782,130783
1jvnA	555	46.85	c.1.2.1,c.23.16.1	67355,67356
1n7kA	234	47.33	c.1.10.1	85374
1bg4A	302	47.68	c.1.8.3	28806
2z1mA	345	50.26		
1j96A	323	50.63	c.1.7.1	71616
1q6zA	528	51.87	c.31.1.3,c.36.1.5,c.36.1.9	111655,111656,111657
1q7zA	566	52.40	c.1.21.2,c.1.26.1	96090,96091
1zczA	464	53.24	c.24.1.3,c.97.1.4	124923,124924
1w8sA	263	53.58	c.1.10.1	120744
1ct5A	256	54.88	c.1.6.2	28663
1tv8A	340	55.24	c.1.28.3	107352
2nxfA	322	55.31		
2qxfA	482	55.58		
1nqkA	381	56.93	c.1.16.4	92050
2cygA	312	57.45	c.1.8.3	131025
1rvkA	382	58.53	c.1.11.2,d.54.1.1	97928,97929
1rrmA	386	58.87	e.22.1.2	105081
2qdeA	397	58.88		
1wg8A	285	59.90	a.60.13.1,c.66.1.23	114605,114606
1us0A	316	60.45	c.1.7.1	99850
2i5gA	325	61.27		
2pceA	386	61.49		
2r8wA	332	62.37		
2fp4B	395	62.63	c.23.4.1,d.142.1.4	133897,133898
1e8cA	498	64.19	c.98.1.1,c.59.1.1,c.72.2.1	59377,59378,59379
2q8xA	331	65.25		
1rvgA	305	71.04	c.1.10.2	97920
2nqlA	388	72.06		
1r85A	379	72.21	c.1.8.3	104839
1zi8A	236	72.72		
2hbjA	410	76.34	a.60.8.4,c.55.3.5	136311,136312
2qv5A	261	76.88		
2f6kA	307	76.92	c.1.9.15	133047
2q09A	416	78.38		
1qgoA	264	79.19	c.92.1.2	35596
2pgfA	371	80.28		
2i57A	438	81.11		
2fb2A	340	81.63		
1gqnA	252	82.02	c.1.10.1	90514
2puzA	419	82.75		
1ujpA	271	82.77	c.1.2.4	99462
3bdiA	207	85.50		
1mla	309	85.70		
2p1jA	186	85.92		
1o2dA	371	88.05	e.22.1.2	86591
2imrA	420	88.63		
1zgdA	312	88.71		
2f96A	224	89.65	c.55.3.5	133153
1z15A	344	89.85