# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.57e-12 1m65A 245 7.54e-10 c.6.3.1 84847 2anuA 255 6.82e-08 c.6.3.1 127058 1v77A 212 7.42e-05 c.6.3.2 108402 2hnhA 910 0.000101 1j6oA 268 0.7909 c.1.9.12 77088 2qt3A 403 1.108 2ffiA 288 1.125 c.1.9.15 133385 2gokA 429 1.240 1vflA 356 1.497 c.1.9.1 120041 2gzxA 265 1.920 1n7kA 234 2.465 c.1.10.1 85374 3cjpA 272 2.964 1qtwA 285 3.596 c.1.15.1 29392 1muwA 386 3.781 c.1.15.3 79495 2qahA 303 3.804 2ob3A 330 4.448 1yixA 265 4.564 c.1.9.12 123371 1zzmA 259 5.865 c.1.9.12 125911 1a0dA 440 6.550 c.1.15.3 29533 1xwyA 264 7.792 c.1.9.12 122411 1gkrA 458 8.084 b.92.1.3,c.1.9.6 70251,70252 1o0yA 260 8.107 c.1.10.1 80756 1ur4A 399 8.175 c.1.8.3 113402 2i57A 438 8.752 2q09A 416 9.062 1i60A 278 9.265 c.1.15.4 71118 1a0cA 438 9.556 c.1.15.3 29529 2puzA 419 10.35 1vcvA 226 10.72 c.1.10.1 119988 1i0dA 332 10.78 c.1.9.3 61487 2g3fA 421 11.01 2i7gA 376 11.22 1y97A 238 12.12 c.55.3.5 122773 1yw1A 442 12.21 c.1.16.4 124130 3c86A 328 12.23 2vc7A 314 12.76 1f6yA 262 12.79 c.1.21.2 29673 1gkpA 458 13.28 b.92.1.3,c.1.9.6 70231,70232 1us0A 316 13.57 c.1.7.1 99850 1frb 315 13.89 1q7zA 566 14.17 c.1.21.2,c.1.26.1 96090,96091 2depA 356 14.37 2ei9A 240 16.68 2yvdA 431 18.07 3be7A 408 18.71 1vbjA 281 19.72 2r6oA 294 19.75 2bgsA 344 19.84 2qw5A 335 19.86 1kkhA 317 20.96 d.14.1.5,d.58.26.3 72645,72646 2icsA 379 23.28 b.92.1.8,c.1.9.14 137241,137242 2pgfA 371 25.74 1bg4A 302 25.99 c.1.8.3 28806 1ra0A 430 26.11 b.92.1.2,c.1.9.5 111756,111757 2pajA 492 26.28 2csuA 457 26.60 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2oa8A 233 27.52 3bofA 566 27.72 2q02A 272 28.79 2o55A 258 29.67 2cygA 312 29.71 c.1.8.3 131025 1gveA 327 29.72 c.1.7.1 70597 1qgoA 264 30.35 c.92.1.2 35596 3cz8A 319 31.35 2nxfA 322 31.54 1zgdA 312 31.91 1rvkA 382 33.22 c.1.11.2,d.54.1.1 97928,97929 1ur3M 319 34.04 c.1.7.1 99806 1mzhA 225 34.60 c.1.10.1 79698 1nqkA 381 36.30 c.1.16.4 92050 1f07A 321 36.98 c.1.16.3 59560 3ciwA 348 38.39 1ny1A 240 38.46 c.6.2.3 86395 1zuaX 317 38.46 2ogyA 262 38.54 2q8xA 331 38.73 1aq0A 306 39.40 c.1.8.3 28842 2podA 410 39.45 1p1xA 260 39.50 c.1.10.1 104060 1j96A 323 39.70 c.1.7.1 71616 1hw6A 278 40.94 c.1.7.1 61296 1vc4A 254 41.64 c.1.2.4 100557 2ox4A 403 41.99 1tvlA 454 42.04 c.1.16.4 107366 2igiA 180 42.22 1ybqB 390 42.30 2g0wA 296 42.54 c.1.15.4 134503 2opjA 327 43.96 1lqaA 346 44.50 c.1.7.1 84674 1ynpA 317 44.93 3buvA 326 45.18 3b9oA 440 45.21 2hfsA 332 46.21 1ub3A 220 46.99 c.1.10.1 88395 1sflA 238 47.87 c.1.10.1 112077 2qpxA 376 49.76 1rk6A 496 50.07 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 2dskA 311 50.27 1fxxA 482 50.80 c.55.3.5 33726 2pg9A 337 51.33 3cnyA 301 52.10 2omkA 231 52.72 1w8sA 263 53.31 c.1.10.1 120744 2yx0A 342 54.99 1nq6A 302 55.15 c.1.8.3 92046 1rhcA 330 55.92 c.1.16.3 97468 2fp4B 395 56.74 c.23.4.1,d.142.1.4 133897,133898 1jvnA 555 57.10 c.1.2.1,c.23.16.1 67355,67356 3canA 182 57.66 2hejA 323 59.32 3c8nA 356 59.35 2b81A 323 60.03 2ao0A 324 60.59 2qv5A 261 60.78 2iw0A 254 63.00 c.6.2.3 137737 1vkhA 273 63.17 c.69.1.32 108662 1m5wA 243 63.65 c.1.24.1 84836 2d5rA 252 63.86 2r8cA 426 66.28 1ytaA 180 67.78 c.55.3.5 124002 1uozA 315 68.78 c.6.1.1 113354 2e7fA 262 69.65 1qwgA 251 71.23 c.1.27.1 96473 2dztA 248 71.51 2ejaA 338 73.45 1bf6A 291 73.98 c.1.9.3 29065 2bs9A 503 74.14 b.71.1.2,c.1.8.3 129062,129063 1zczA 464 76.77 c.24.1.3,c.97.1.4 124923,124924 2amxA 376 79.13 c.1.9.1 127024 2nqlA 388 80.61 2fb2A 340 81.22 2yr1A 257 82.34 1mi3A 322 82.71 c.1.7.1 91274 3co4A 312 83.88 1m2kA 249 84.09 c.31.1.5 84754 2imrA 420 84.11 1ezwA 349 84.71 c.1.16.3 29558 1qwkA 317 86.17 c.1.7.1 96482 2z1mA 345 86.98 2ps2A 371 87.48 1tv8A 340 88.11 c.1.28.3 107352 1s1pA 331 88.46 c.1.7.1 98350 2fliA 220 89.16 c.1.2.2 133714 3d0cA 314 89.29 2h1vA 310 89.54 2d1zA 436 89.63