# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.38e-15 1m65A 245 4.50e-12 c.6.3.1 84847 2anuA 255 2.24e-09 c.6.3.1 127058 2hnhA 910 2.03e-06 1v77A 212 3.18e-06 c.6.3.2 108402 1j6oA 268 0.8608 c.1.9.12 77088 2ob3A 330 1.021 1vflA 356 1.129 c.1.9.1 120041 2ffiA 288 1.735 c.1.9.15 133385 2qahA 303 2.051 2qt3A 403 2.832 2gzxA 265 2.858 1gkpA 458 2.892 b.92.1.3,c.1.9.6 70231,70232 1gkrA 458 2.944 b.92.1.3,c.1.9.6 70251,70252 1muwA 386 4.202 c.1.15.3 79495 1xwyA 264 4.216 c.1.9.12 122411 1zzmA 259 4.346 c.1.9.12 125911 1i60A 278 4.904 c.1.15.4 71118 2z00A 426 5.256 1a0cA 438 5.270 c.1.15.3 29529 1a0dA 440 5.498 c.1.15.3 29533 2i57A 438 6.084 1yw1A 442 6.214 c.1.16.4 124130 1qtwA 285 6.513 c.1.15.1 29392 1ybqB 390 7.447 1bf6A 291 7.794 c.1.9.3 29065 2vc7A 314 7.876 2igiA 180 8.031 1ur4A 399 8.718 c.1.8.3 113402 1y97A 238 9.009 c.55.3.5 122773 1o0yA 260 9.937 c.1.10.1 80756 1i0dA 332 10.73 c.1.9.3 61487 2pgfA 371 11.67 1f07A 321 11.71 c.1.16.3 59560 2q02A 272 12.17 1yixA 265 12.42 c.1.9.12 123371 2oa8A 233 12.98 1fxxA 482 13.22 c.55.3.5 33726 2i7gA 376 13.28 1tvlA 454 13.71 c.1.16.4 107366 2gokA 429 14.01 1us0A 316 15.97 c.1.7.1 99850 1n7kA 234 16.67 c.1.10.1 85374 1vbjA 281 17.86 3ciwA 348 18.97 1ytaA 180 19.08 c.55.3.5 124002 3c86A 328 19.26 2qw5A 335 19.43 1o12A 376 19.47 b.92.1.5,c.1.9.10 80758,80759 1hw6A 278 20.19 c.1.7.1 61296 2icsA 379 20.55 b.92.1.8,c.1.9.14 137241,137242 2b81A 323 21.04 1k77A 260 22.37 c.1.15.5 72096 1zgdA 312 22.38 3b9oA 440 22.97 1q7zA 566 23.19 c.1.21.2,c.1.26.1 96090,96091 2d5rA 252 25.18 1tv8A 340 26.30 c.1.28.3 107352 1frb 315 29.20 3be7A 408 29.53 3cnyA 301 31.11 2g0wA 296 32.64 c.1.15.4 134503 2f96A 224 32.89 c.55.3.5 133153 2g3fA 421 33.21 1j96A 323 33.29 c.1.7.1 71616 2pajA 492 33.43 3bofA 566 34.64 2r8wA 332 35.10 1toaA 313 35.71 c.92.2.2 35598 1zuaX 317 36.87 1s1pA 331 37.53 c.1.7.1 98350 2csuA 457 37.85 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1qwkA 317 38.27 c.1.7.1 96482 2omkA 231 38.35 2pg3A 232 38.68 2hbvA 334 39.87 c.1.9.15 136320 1k0fA 277 41.17 c.92.2.2 71974 1ezwA 349 41.56 c.1.16.3 29558 1yc5A 246 43.39 c.31.1.5 122910 2qpxA 376 43.66 1vbuA 328 44.81 c.1.8.3 119963 2hbjA 410 44.96 a.60.8.4,c.55.3.5 136311,136312 2qv5A 261 45.85 2opjA 327 50.54 1qgoA 264 50.61 c.92.1.2 35596 1w8sA 263 51.42 c.1.10.1 120744 2q09A 416 52.58 2bw0A 329 54.29 b.46.1.1,c.65.1.1 129303,129304 1gqnA 252 54.84 c.1.10.1 90514 2ojpA 292 56.61 1vljA 407 58.16 e.22.1.2 108832 1mi3A 322 58.16 c.1.7.1 91274 1dxeA 256 58.92 c.1.12.5 29310 2amxA 376 59.38 c.1.9.1 127024 1bg4A 302 59.42 c.1.8.3 28806 2fb2A 340 59.48 1f6yA 262 59.64 c.1.21.2 29673 1nqkA 381 62.27 c.1.16.4 92050 2v8pA 271 62.98 2depA 356 63.02 2nqlA 388 63.30 2fp4B 395 64.72 c.23.4.1,d.142.1.4 133897,133898 2pcqA 283 64.92 1yacA 208 65.00 c.33.1.3 31757 2r91A 286 66.34 1rrmA 386 67.67 e.22.1.2 105081 2dztA 248 67.83 2p1jA 186 67.90 2rfgA 297 68.52 2yw3A 207 68.77 1ny1A 240 72.50 c.6.2.3 86395 1ra0A 430 72.53 b.92.1.2,c.1.9.5 111756,111757 2pezA 179 73.64 2iyeA 263 74.21 1oltA 457 77.17 c.1.28.2 93334 1g5bA 221 79.00 d.159.1.3 60261 1rkqA 282 79.88 c.108.1.10 97621 2j13A 247 79.94 c.6.2.3 137934 2gwnA 452 81.58 2atsA 292 81.83 c.1.10.1 127306 3c8nA 356 82.72 2v9dA 343 82.76 2purA 292 82.98 2fvkA 559 83.54 b.92.1.3,c.1.9.6 134204,134205 2pthA 193 85.11 c.56.3.1 33793 1zjjA 263 86.64 1vfsA 386 86.89 b.49.2.2,c.1.6.1 108584,108585 2a5hA 416 87.34 2q01A 497 87.73 1uk8A 282 87.81 c.69.1.10 107907 1g57A 217 89.67 d.115.1.2 60253 1sflA 238 89.77 c.1.10.1 112077